Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1012 168 8e-36 seq558 136 5e-26 seq2708 129 7e-24 seq90 105 8e-17 seq53 104 3e-16 seq3 93.3 5e-13 >seq1012 Length=16087 Score = 168 bits (186), Expect = 8e-36 Identities = 329/488 (67%), Gaps = 15/488 (3%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||||||||| || |||| || ||||| ||||||||||| |||| ||||| || Sbjct 732 TGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAG 673 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||||||||| || | ||| | ||||| ||||| | ||| | | || Sbjct 672 GTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCA 613 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| |||||| |||||||| | ||||| ||||| ||||||||||| |||||| Sbjct 612 ATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCG 553 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| ||||||| || || || ||||| || || || | || | |||||| Sbjct 552 ATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCG 493 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 |||||||||||||| || | || || || |||| | |||||| || |||||| Sbjct 492 GCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATCAGGTTGTAGGTT 433 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 ||| ||||| || |||| || || || ||| | ||||| Sbjct 432 TCGATGACGCG------------TTCAACGT---CATCGCCCCAGATGCCCACAGCGACA 388 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGAC 1630485 ||||||| ||||| ||| || | |||| | | |||| | ||| ||||| || Sbjct 387 CGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGAT 328 Query 1630486 CGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGCG 1630545 | || |||| ||| ||| ||||| | || || |||||||||| | |||||| Sbjct 327 CTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAGTCGCGGTCGTAGACGATGGCA 268 Query 1630546 GCGTCGAG 1630553 | ||| || Sbjct 267 GAGTCAAG 260 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 ||||| || ||||| || |||| || || || |||||||||| ||| || ||| ||| Sbjct 1401 TCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCC 1342 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || | |||||||||||||||| |||||| | | ||||||||| | || ||||||||| Sbjct 1341 TCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTTGAGGTTACGAACAACGACCTGG 1282 Query 1627990 ACGATCTCGTGCAG 1628003 || |||||| || Sbjct 1281 GTGACCTCGTGGAG 1268 Score = 98.7 bits (108), Expect = 1e-14 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1628166 GACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGG 1628224 || |||||| ||||| ||||||| | ||| | ||||||||||||| ||||||| | Sbjct 1168 GATGATCTCAGTGCAGAGGTTGGAGCTACGGA-TAGTACCCAGGTTCTTCTGGTTGCTCT 1110 Query 1628225 TCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGA 1628284 | ||||| | || ||||||| ||||||| |||| |||||||||| |||| ||| ||| Sbjct 1109 TGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGA 1050 Query 1628285 CGATGGCCGACCAGATCT 1628302 ||||| |||||| || Sbjct 1049 GAATGGCATACCAGAGCT 1032 Score = 89.7 bits (98), Expect = 6e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || ||| ||||| | || || |||||| ||||| || |||| | Sbjct 1787 GGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGG 1728 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 |||| | ||| ||||||||| |||||| || || |||| || |||||| |||| | Sbjct 1727 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 1668 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512 | || || |||||||| | |||||||| | || || || | ||| || ||||||||| Sbjct 1667 CAAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAGAGCATCCCAGTCC 1609 Query 1627513 CAG 1627515 ||| Sbjct 1608 CAG 1606 >seq558 Length=23693 Score = 136 bits (150), Expect = 5e-26 Identities = 92/103 (89%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| |||||||||||||| ||||| |||| |||||| | || |||||||||| Sbjct 16738 CCAACTACCTTGACATCAAGCCTCTACTCGACGTTGGTTGCAAGACCGTTGCCAACATGA 16679 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 16678 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACCTTCAACAT 16636 >seq2708 Length=6177 Score = 129 bits (142), Expect = 7e-24 Identities = 317/469 (68%), Gaps = 20/469 (4%) Strand=Plus/Minus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 2724 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 2666 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| |||||| |||| Sbjct 2665 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 2606 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867 | ||||| | |||||| | | | ||| || || | |||| ||| || Sbjct 2605 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCAAGGAACTGTGGGG-----AGATGGT 2551 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | |||| ||| | |||| || | ||||| || || ||||| || || | Sbjct 2550 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 2494 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| ||| |||||| || Sbjct 2493 GCGAGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGAT 2434 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| ||||| Sbjct 2433 GAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 2374 Query 1727047 AAGCGCGTCG-CCGACCTCGTCTCGGACAAAGGCGCGCAGGCGTCGGCCATAGTCGACGA 1727105 || |||| |||| ||||| | | ||| || || || || || | | Sbjct 2373 GAG---GTCGCCCGAGAGGCGCTCGG-CGAGGGCCTTGAGACGCTCGCAGTACTCAAGGG 2318 Query 1727106 CGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAACCAGCAGCCG 1727154 ||| ||| |||||||| ||| || || || | ||| || ||||| || Sbjct 2317 CGGTCGCGGGGTCGTGGAGCGAGCAGGGGCCGATGATGACGAGCAGGCG 2269 >seq90 Length=51520 Score = 105 bits (116), Expect = 8e-17 Identities = 174/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || ||||||||||| || | || ||||| Sbjct 4944 GCCTTTTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCAGGGAGATG 5003 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || ||||||| | ||||||| ||| ||| || || | | Sbjct 5004 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGGGCAACC 5063 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | |||||||||||||| ||||| |||||||| ||| |||| || ||||||||||| Sbjct 5064 AAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCGAGC 5123 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| ||| ||||| | || |||| ||| || ||||| || Sbjct 5124 AGGGCACAAGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCGTCGACAATA 5183 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 5184 ATGT-CCTGG 5192 Score = 91.5 bits (100), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | || ||| |||| || ||||||||||| || ||||| Sbjct 5258 ACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 5317 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | || ||| ||| || || ||||||||||| || || Sbjct 5318 CTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATACCCTCGACGGCAGCGAA 5377 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356 | | || |||| ||| ||| |||| | ||| | | | |||||||| | ||| Sbjct 5378 TGCAACCAGGCGCTGGGCGAAG-----GAGGACTTCTCATCGCTAATCCACTTGAGAGCC 5432 Query 869357 CAGTCGGCCTTTTT 869370 ||||||||||| || Sbjct 5433 CAGTCGGCCTTCTT 5446 >seq53 Length=57647 Score = 104 bits (114), Expect = 3e-16 Identities = 170/242 (70%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 1573998 GAGCGC-GGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGA 1574056 |||||| || |||||||||| || || ||||||| |||| |||| | || Sbjct 25793 GAGCGCAGGAATCGACGTCGTCCGTAATCGCATCAAGGGTTTCGCCCAGAAGAAGGTCAC 25852 Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116 | |||| | || ||||||||| | | || ||||||||||||||| || | || || | Sbjct 25853 CTTGCCCCAGGGCCGCCACAAGCTTGTGATTCTCGACGAGGCCGACAGCATGACATCAGG 25912 Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 |||||||| ||||| || || ||||| | || |||||||||||||||| ||| | Sbjct 25913 TGCCCAGCAAGCCCTTCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTT 25972 Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTG 1574234 || |||||| ||| | | | || ||| || | | |||||| |||||||| || Sbjct 25973 CGCCTGCAACCAGTCCAACAAGATTATTGAG--CCGCTACAGTCGCGATGCGCCATCCTC 26030 Query 1574235 CG 1574236 || Sbjct 26031 CG 26032 >seq3 Length=97984 Score = 93.3 bits (102), Expect = 5e-13 Identities = 170/246 (69%), Gaps = 15/246 (6%) Strand=Plus/Minus Query 1572388 GCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCGGGCTCGGG 1572447 ||| ||||||||| ||| ||| || | | || ||| ||||||| || |||||| Sbjct 78005 GCCGAAGCCGCCGGCGCCACGCACGCTCGCCTCGAGCTCGTCGACCTCGACGATCTCGGG 77946 Query 1572448 TTGGGCAAT---CTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTG 1572504 | || || | ||| |||| ||||||| ||| ||||||| | | || | Sbjct 77945 AGTGAAGATGCGCTCTACGACGAGC---TGGGCGACGCGG---TCGCCCTCGGCGACTTC 77892 Query 1572505 G---TCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATC 1572561 | ||||| |||| |||||||||||| | ||| ||||| ||||| |||||||| || Sbjct 77891 GAAGTCGGCTTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCACCGCGGTAGTCGGCGTC 77832 Query 1572562 GATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGCGCGGCGCCAC 1572618 ||||||||| ||||| |||||| | | || |||| ||| |||||||| || | Sbjct 77831 GATGACGCCGGCGCCCGTGTCGATGAAGTTCTTGGCGGCGAGGCCGGAGCGCGGGGCAAT 77772 Query 1572619 GCGCCC 1572624 ||| || Sbjct 77771 GCGGCC 77766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106445343105235