Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 174 1e-38
seq460 131 2e-25
seq1955 113 4e-20
>seq1012
Length=16087
Score = 174 bits (192), Expect = 1e-38
Identities = 972/1533 (63%), Gaps = 72/1533 (5%)
Strand=Plus/Minus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
|||||||| || || || | || || || || || || |||| | ||||| ||
Sbjct 1779 ACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAG 1720
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
| || ||||| |||| ||||||| ||| | || ||||||||| ||| || | |||
Sbjct 1719 CACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGA 1660
Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687
|| || || | |||||| ||||||| | ||||| || | ||||||||| | |||
Sbjct 1659 GAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAGAGATCC 1600
Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----AAACTTGCGGGACTGCC 138743
|| || |||||||| |||||||| | || ||| |||| | ||| ||
Sbjct 1599 GAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGG--GGAA--CC 1544
Query 138744 TTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG--CCTCG--AGCG 138799
||||||| ||||| ||| ||| ||||||| || | | | | || |
Sbjct 1543 CTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACT----GCACCGACATGGTAAGGG 1488
Query 138800 CACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGT 138859
|| | | ||| || || ||| |||| || ||||| || || |||| | |||
Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAA 1428
Query 138860 ACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGC 138919
| ||||||||||| | ||| || ||||| || || || || || | || | ||||
Sbjct 1427 AGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGC 1368
Query 138920 GATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATG 138975
| ||||||| || ||| ||||| || || || || || | ||| || |||||
Sbjct 1367 GGTGGCGCATGTT----GCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATA 1312
Query 138976 ATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTA 139034
||| |||| | || || || || |||| || | | | | | | | || |||||
Sbjct 1311 ATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCT-CGTGGAGCTTCTGGAAGTCGTA 1253
Query 139035 TGTGCCCCCGTTGTCGTCGACGACG-TCGACAAATTTGTTGACACAAATCGAGGCTATGT 139093
||| |||||| ||| |||| | | | || | | | |||||| | ||
Sbjct 1252 GACACCCTCGTTGTAGTCAACGAAGGTGGGCAG-------GGCG---AGCGAGGCCAGGT 1203
Query 139094 TGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTA---C 139150
| || || || || || || || ||| |||||||| || || | || | || |
Sbjct 1202 TACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGC 1143
Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210
||| ||| ||||| | || | || ||||| || ||||| |||||| ||||| |
Sbjct 1142 TACG---GATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGA 1086
Query 139211 GCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAG 139270
|||| | || |||| || || || | ||| | |||| | || || ||
Sbjct 1085 GCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCAT---ACCAG-----AG 1034
Query 139271 CTTGTAT---TTGACGCACGTAAAGTTCGTCGC------GCTCGTACTTTTCGTAGAGTT 139321
||| | |||| | | | | | | || |||||||||| ||||| ||
Sbjct 1033 CTTTTGGGCCTTGATGGTCTTGC-GACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGG 975
Query 139322 CGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCG 139381
||||| || |||||| ||| | |||| | |||||| || || |||||||| |
Sbjct 974 TCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAG 915
Query 139382 ACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACA 139441
||| | |||||| || || | | ||||||| ||||| || ||||| | ||||| |
Sbjct 914 TCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGA 855
Query 139442 GCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTA-AGGAAATCA 139500
| ||||| || || ||| || ||| | | | | | | | ||| ||
Sbjct 854 AAAGGTCGCGGGCGCGGACCTCCTCCTTGCC-ATGGTTCTTGCGAAGATCCAAGAAGTCG 796
Query 139501 AAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCA 139557
|| |||||||||||||| || || || || || || | || || || ||| |||
Sbjct 795 AAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCA 736
Query 139558 CCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTC 139617
||||| ||||||| || ||| |||||||| || || | ||| || | | |||| |
Sbjct 735 CCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTA 676
Query 139618 GCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATG 139677
| || |||||||||| | ||| | | | ||| |||| | || |||||||
Sbjct 675 GAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGA 616
Query 139678 CCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACC 139736
|| || || ||| | | |||||| || | | |||| || | | || ||||| |||||
Sbjct 615 CCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTG-AGGGTGTCGTAGATACC 557
Query 139737 TCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGT 139796
|| ||| |||| ||| ||| || ||||| || || || || | | ||
Sbjct 556 CTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGT 497
Query 139797 GCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTA 139856
|||||| || || |||||| ||||| || || | | ||||||||| | |||
Sbjct 496 GCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATCAGGTTGTA 437
Query 139857 CGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCAT 139916
||||||||| ||| ||| || || ||| || |||| ||| ||||| | |||
Sbjct 436 GGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCAT 377
Query 139917 ATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCT--AGG 139974
|| || | ||||| | | ||| || | || || || || ||||| | |
Sbjct 376 GTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA--CGATCTCTCCAAG 319
Query 139975 GTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007
|||||| |||| ||||| ||||||||| |||
Sbjct 318 GTCTTGAAGCCGAAGTATTGATAGTTGAAGTCG 286
>seq460
Length=27106
Score = 131 bits (144), Expect = 2e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | ||||| || || || || ||||| || ||| | ||
Sbjct 24391 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCC 24450
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| |||||||| ||||| || || || |||||||||||
Sbjct 24451 GACACCATTGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 24510
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| |||||||| || ||||| || |||||||| ||| | | |||| || || |||
Sbjct 24511 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAAC 24570
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
||||| ||||| ||||| || ||| | |||
Sbjct 24571 ATTCAGAAGGAGTCGACTCTCCACCTTGTG 24600
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || | ||||| || || ||||||||||| || || | |
Sbjct 24619 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAGTCATCG 24678
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || |||| |||| | ||||| ||||| || || || || ||||| || ||
Sbjct 24679 GACACAATCGACAACGTTAAATC-CAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCA 24737
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| ||| | || ||||| || || ||||||||||| | | | || ||||| ||
Sbjct 24738 GCAGCGTCTCATTTTTGCTGGAAAGCAGCTGGAGGACGGTCGCACCCTGAGCGATTACAA 24797
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||| ||||| ||||| || ||| | || | || |||| || ||
Sbjct 24798 CATTCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGG 24845
>seq1955
Length=8910
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || ||||| || ||||| || || | ||
Sbjct 3564 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 3623
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 3624 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 3683
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||| ||||| || ||||| ||||| | | | |||| || || |||
Sbjct 3684 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 3743
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933
|| || ||||| || || || ||| ||||| |||| |||| || || ||
Sbjct 3744 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGG 3793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449850051447400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |