Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1012 174 1e-38 seq460 131 2e-25 seq1955 113 4e-20 >seq1012 Length=16087 Score = 174 bits (192), Expect = 1e-38 Identities = 972/1533 (63%), Gaps = 72/1533 (5%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 |||||||| || || || | || || || || || || |||| | ||||| || Sbjct 1779 ACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAG 1720 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | || ||||| |||| ||||||| ||| | || ||||||||| ||| || | ||| Sbjct 1719 CACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGA 1660 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 || || || | |||||| ||||||| | ||||| || | ||||||||| | ||| Sbjct 1659 GAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAGAGATCC 1600 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----AAACTTGCGGGACTGCC 138743 || || |||||||| |||||||| | || ||| |||| | ||| || Sbjct 1599 GAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGG--GGAA--CC 1544 Query 138744 TTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG--CCTCG--AGCG 138799 ||||||| ||||| ||| ||| ||||||| || | | | | || | Sbjct 1543 CTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACT----GCACCGACATGGTAAGGG 1488 Query 138800 CACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGT 138859 || | | ||| || || ||| |||| || ||||| || || |||| | ||| Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAA 1428 Query 138860 ACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGC 138919 | ||||||||||| | ||| || ||||| || || || || || | || | |||| Sbjct 1427 AGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGC 1368 Query 138920 GATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATG 138975 | ||||||| || ||| ||||| || || || || || | ||| || ||||| Sbjct 1367 GGTGGCGCATGTT----GCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATA 1312 Query 138976 ATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTA 139034 ||| |||| | || || || || |||| || | | | | | | | || ||||| Sbjct 1311 ATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCT-CGTGGAGCTTCTGGAAGTCGTA 1253 Query 139035 TGTGCCCCCGTTGTCGTCGACGACG-TCGACAAATTTGTTGACACAAATCGAGGCTATGT 139093 ||| |||||| ||| |||| | | | || | | | |||||| | || Sbjct 1252 GACACCCTCGTTGTAGTCAACGAAGGTGGGCAG-------GGCG---AGCGAGGCCAGGT 1203 Query 139094 TGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTA---C 139150 | || || || || || || || ||| |||||||| || || | || | || | Sbjct 1202 TACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGC 1143 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 ||| ||| ||||| | || | || ||||| || ||||| |||||| ||||| | Sbjct 1142 TACG---GATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGA 1086 Query 139211 GCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAG 139270 |||| | || |||| || || || | ||| | |||| | || || || Sbjct 1085 GCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCAT---ACCAG-----AG 1034 Query 139271 CTTGTAT---TTGACGCACGTAAAGTTCGTCGC------GCTCGTACTTTTCGTAGAGTT 139321 ||| | |||| | | | | | | || |||||||||| ||||| || Sbjct 1033 CTTTTGGGCCTTGATGGTCTTGC-GACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGG 975 Query 139322 CGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCG 139381 ||||| || |||||| ||| | |||| | |||||| || || |||||||| | Sbjct 974 TCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAG 915 Query 139382 ACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACA 139441 ||| | |||||| || || | | ||||||| ||||| || ||||| | ||||| | Sbjct 914 TCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGA 855 Query 139442 GCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTA-AGGAAATCA 139500 | ||||| || || ||| || ||| | | | | | | | ||| || Sbjct 854 AAAGGTCGCGGGCGCGGACCTCCTCCTTGCC-ATGGTTCTTGCGAAGATCCAAGAAGTCG 796 Query 139501 AAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCA 139557 || |||||||||||||| || || || || || || | || || || ||| ||| Sbjct 795 AAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCA 736 Query 139558 CCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTC 139617 ||||| ||||||| || ||| |||||||| || || | ||| || | | |||| | Sbjct 735 CCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTA 676 Query 139618 GCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATG 139677 | || |||||||||| | ||| | | | ||| |||| | || ||||||| Sbjct 675 GAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGA 616 Query 139678 CCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACC 139736 || || || ||| | | |||||| || | | |||| || | | || ||||| ||||| Sbjct 615 CCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTG-AGGGTGTCGTAGATACC 557 Query 139737 TCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGT 139796 || ||| |||| ||| ||| || ||||| || || || || | | || Sbjct 556 CTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGT 497 Query 139797 GCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTA 139856 |||||| || || |||||| ||||| || || | | ||||||||| | ||| Sbjct 496 GCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATCAGGTTGTA 437 Query 139857 CGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCAT 139916 ||||||||| ||| ||| || || ||| || |||| ||| ||||| | ||| Sbjct 436 GGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCAT 377 Query 139917 ATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCT--AGG 139974 || || | ||||| | | ||| || | || || || || ||||| | | Sbjct 376 GTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA--CGATCTCTCCAAG 319 Query 139975 GTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 |||||| |||| ||||| ||||||||| ||| Sbjct 318 GTCTTGAAGCCGAAGTATTGATAGTTGAAGTCG 286 >seq460 Length=27106 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || ||||| || ||| | || Sbjct 24391 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCC 24450 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| || || || ||||||||||| Sbjct 24451 GACACCATTGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 24510 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||| || ||||| || |||||||| ||| | | |||| || || ||| Sbjct 24511 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAAC 24570 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| ||||| || ||| | ||| Sbjct 24571 ATTCAGAAGGAGTCGACTCTCCACCTTGTG 24600 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | ||||| || || ||||||||||| || || | | Sbjct 24619 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAGTCATCG 24678 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| |||| | ||||| ||||| || || || || ||||| || || Sbjct 24679 GACACAATCGACAACGTTAAATC-CAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCA 24737 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | || ||||| || || ||||||||||| | | | || ||||| || Sbjct 24738 GCAGCGTCTCATTTTTGCTGGAAAGCAGCTGGAGGACGGTCGCACCCTGAGCGATTACAA 24797 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| ||||| || ||| | || | || |||| || || Sbjct 24798 CATTCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGG 24845 >seq1955 Length=8910 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || ||||| || || | || Sbjct 3564 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 3623 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 3624 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 3683 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| ||||| | | | |||| || || ||| Sbjct 3684 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 3743 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || || ||| ||||| |||| |||| || || || Sbjct 3744 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGG 3793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449850051447400