Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq112 120 3e-22 >seq112 Length=48623 Score = 120 bits (132), Expect = 3e-22 Identities = 215/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 || ||||| ||||| | || | | || | || |||||| |||||| || || || Sbjct 39758 TCTGTCTCGGGGTTCTTGCACTTCTTGCAGAGGACGAACTTGTTGATGAAGCCGTCGAGG 39699 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 ||||||| | ||| ||| | |||||||||||||| ||| | || |||| | Sbjct 39698 TGGTCCTGCAGCTTGGCGGCATTGTGGGAGCCGTTGATGATCCAGCGGTCGTCGGCGGGG 39639 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 ||||| | || || || || |||||| | ||||||||||| | || | ||| Sbjct 39638 TCGACGTTGGTCTGGGCACCGAGCTCGAAGCCGAAGTACTTGATGACATAGGCACCGGGA 39579 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 || | || | || |||| | || |||||||| || |||||||||||||||||| Sbjct 39578 CGGGCGAGGGACTGAGCGACGCTGCTCAGGTTGACGACAACGGTCTTGATGCCGTTGCCC 39519 Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACA 34617 || || |||| ||||| | ||| | ||| |||||||| ||||| |||||| || Sbjct 39518 TTGCCCTCGATCTTGGTGACGATCTTCTCCATCTTGTAGCGATAGAAAGCGTCCTTGACG 39459 Query 34618 TTGCGGTTAACGTT 34631 | |||| |||||| Sbjct 39458 TCGCGGCGAACGTT 39445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412799058608315