Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq558 127 3e-23 seq53 127 3e-23 seq1012 125 1e-22 seq90 105 1e-16 >seq558 Length=23693 Score = 127 bits (140), Expect = 3e-23 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| || ||||| | || ||||||||||| |||||| | | Sbjct 16738 CCAACTACCTTGACATCAAGCCTCTACTCGACGTTGGTTGCAAGACCGTTGCCAACATGA 16679 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| |||||||| |||||||||||||| ||||| Sbjct 16678 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACCTTCAACAT 16636 >seq53 Length=57647 Score = 127 bits (140), Expect = 3e-23 Identities = 215/308 (70%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 2019135 GAGCGC-GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TC 2019191 |||||| || | |||||||| |||| ||||||| | ||| | | ||||| || Sbjct 25793 GAGCGCAGGAATCGACGTCGTCCGTAATCGCATCAAGGGTTTCGC--CCAGAAGAAGGTC 25850 Query 2019192 GACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCG 2019251 | |||| | |||||||||||| | | || ||||| ||||||||| || | || || Sbjct 25851 ACCTTGCCCCAGGGCCGCCACAAGCTTGTGATTCTCGACGAGGCCGACAGCATGACATCA 25910 Query 2019252 GCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCG 2019311 | |||||||| ||||| || || ||||| | ||| ||||||||||||| || || Sbjct 25911 GGTGCCCAGCAAGCCCTTCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCC 25970 Query 2019312 CTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTG 2019371 | ||||||||| ||| | | | || || | || ||| || ||||||||| | Sbjct 25971 TTCGCCTGCAACCAGTCCAACAAGATTATTGAGCCGCTACAGTCGCGATGCGCCATCCTC 26030 Query 2019372 CGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCC 2019431 || | ||| || ||||||||| ||| | | | ||| ||| |||||||||| || Sbjct 26031 CGGTATGCCCGGCTCACCGACCAGCAGGTGGTCAAGCGGTTGCTGCAGATTATCGAGGCG 26090 Query 2019432 GAAAAGGT 2019439 |||||||| Sbjct 26091 GAAAAGGT 26098 >seq1012 Length=16087 Score = 125 bits (138), Expect = 1e-22 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| ||||| || |||| || ||||| ||||||||||| || | ||||| || Sbjct 732 TGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAG 673 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||||||||||| || | ||| | ||| | ||||| | ||| | | || Sbjct 672 GTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCA 613 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| |||||| |||||||| | ||||| | || || || |||||||| |||||| Sbjct 612 ATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCG 553 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||||| ||||||| || | || ||||| || || || | | | |||||| Sbjct 552 ATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCG 493 Query 2073781 GCATTGAAGAGCGTGGG 2073797 || ||||||||||| || Sbjct 492 GCGTTGAAGAGCGTAGG 476 Score = 91.5 bits (100), Expect = 2e-12 Identities = 354/547 (65%), Gaps = 32/547 (6%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||||||||| ||| |||| | | |||||||| ||||||||||| Sbjct 2133 TGGTCGACGGTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 2074 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC---ATTC 2069367 ||||| || ||| | ||| | | |||||| ||||| || | | | | Sbjct 2073 GTCTTCAGACCGAGCTTCCAACCAGCGAAGTGCATGCTGGTGAT---CTTGCCCATAGTT 2017 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| | || || ||| |||||||| |||||||| ||| | |||||||| Sbjct 2016 GGGTCCTTCATGTGGATGTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 1957 Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484 ||||| | ||| ||| |||| | ||| | ||||| ||||||||| |||| || ||| Sbjct 1956 GCCATCTGCACGACGGT-ACGCTG--GGAGATTTCCCAAACGGTCTTGTACAGTGCTTTG 1900 Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544 | | | || | | | | | | ||| | || || | | | || || | Sbjct 1899 ACCTCGGTAGGAATGTTGGGG------ATGTTCTGAATAGAACCGTTCTCGGCAATAATA 1846 Query 2069545 CGGT-CGCGAAAG--TCGGGCGTCCACAGGCCGCGCGCCATC-ATGCGCTCGACCAGGTG 2069600 |||| | | || |||| | |||||||| ||| | | | || || | | Sbjct 1845 CGGTTCTTCATAGCATCGGAC---CACAGGCCCAT----ATCGACGAGGTCCTTCAAGAG 1793 Query 2069601 GC---GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGT 2069657 | ||||||| || ||| ||||| | || || |||||| ||||| || || Sbjct 1792 CCAAGGGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGT 1733 Query 2069658 GATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAG 2069717 | | |||| | ||| ||||||||| |||||| || || |||| || |||||| | Sbjct 1732 GTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGG 1673 Query 2069718 CGCCACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCA 2069777 ||| || ||||| |||||||| | |||| ||| | | || || ||| || ||||| Sbjct 1672 CGCGACAAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCA 1613 Query 2069778 GTCCCAG 2069784 ||||||| Sbjct 1612 GTCCCAG 1606 Score = 86.0 bits (94), Expect = 1e-10 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 2070010 TAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGCCGCCGCATGGTAGATCGTC 2070069 ||||| ||||||| ||||| || ||||| || || || |||||||| ||| Sbjct 1530 TAGGGACCCTCCTCCCTGGCCAACTGCACCGACATGGTAAGGGCAGCGTGGTAGATTGTC 1471 Query 2070070 TCAAAGATGGTGCGGTTGAGGCGACGCGCGCCGGCGCTCTCCCACGGCAGGTCCATCATG 2070129 || || || | ||||||| ||| || ||| | ||| | |||| | | | Sbjct 1470 TCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGCATGCGGAGA--G 1413 Query 2070130 GCAA--ACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCG 2070187 ||| | || ||||| || ||||| || |||| || || || |||||||||| ||| Sbjct 1412 CCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGC 1353 Query 2070188 AGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTT 2070242 || || ||||| | |||||||||||||||| |||||| | | ||||||||| Sbjct 1352 TGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTTGAGGTT 1298 >seq90 Length=51520 Score = 105 bits (116), Expect = 1e-16 Identities = 97/120 (81%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| ||||||| || | || | |||| ||||||| ||||||||| || Sbjct 5522 GTGTCAATGGCGTTGAAGAGGTACGTGCG-CTGGGCCGGCTCCTTGATGTAGGTGTCAAT 5580 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| | |||||||||||| ||||||||||| || || ||||||||||||||| ||||| Sbjct 5581 GAGCAACGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCA 5640 Score = 91.5 bits (100), Expect = 2e-12 Identities = 178/259 (69%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| ||| || ||||||||||| || | | Sbjct 4936 TGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCA 4995 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | || ||||||| | | |||| ||| ||| || | Sbjct 4996 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAA 5055 Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 | | | |||| ||||||||||||||||| ||||||||||| ||| ||| || |||| Sbjct 5056 GGGCAACCAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTC 5114 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| || || || || | ||| | | ||||| | || |||| ||| || Sbjct 5115 ATGCCGAGCAGGGCACAAGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCG 5174 Query 794130 TCGATGATGATCTGCCTGG 794148 |||| || || | ||||| Sbjct 5175 TCGACAATAATGT-CCTGG 5192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915347003086745