Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq558 127 3e-23
seq53 127 3e-23
seq1012 125 1e-22
seq90 105 1e-16
>seq558
Length=23693
Score = 127 bits (140), Expect = 3e-23
Identities = 90/103 (87%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||| ||||||||||| || ||||| | || ||||||||||| |||||| | |
Sbjct 16738 CCAACTACCTTGACATCAAGCCTCTACTCGACGTTGGTTGCAAGACCGTTGCCAACATGA 16679
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 16678 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACCTTCAACAT 16636
>seq53
Length=57647
Score = 127 bits (140), Expect = 3e-23
Identities = 215/308 (70%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 2019135 GAGCGC-GGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TC 2019191
|||||| || | |||||||| |||| ||||||| | ||| | | ||||| ||
Sbjct 25793 GAGCGCAGGAATCGACGTCGTCCGTAATCGCATCAAGGGTTTCGC--CCAGAAGAAGGTC 25850
Query 2019192 GACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCG 2019251
| |||| | |||||||||||| | | || ||||| ||||||||| || | || ||
Sbjct 25851 ACCTTGCCCCAGGGCCGCCACAAGCTTGTGATTCTCGACGAGGCCGACAGCATGACATCA 25910
Query 2019252 GCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCG 2019311
| |||||||| ||||| || || ||||| | ||| ||||||||||||| || ||
Sbjct 25911 GGTGCCCAGCAAGCCCTTCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCC 25970
Query 2019312 CTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTG 2019371
| ||||||||| ||| | | | || || | || ||| || ||||||||| |
Sbjct 25971 TTCGCCTGCAACCAGTCCAACAAGATTATTGAGCCGCTACAGTCGCGATGCGCCATCCTC 26030
Query 2019372 CGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCC 2019431
|| | ||| || ||||||||| ||| | | | ||| ||| |||||||||| ||
Sbjct 26031 CGGTATGCCCGGCTCACCGACCAGCAGGTGGTCAAGCGGTTGCTGCAGATTATCGAGGCG 26090
Query 2019432 GAAAAGGT 2019439
||||||||
Sbjct 26091 GAAAAGGT 26098
>seq1012
Length=16087
Score = 125 bits (138), Expect = 1e-22
Identities = 182/257 (71%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
|||||||| ||||| || |||| || ||||| ||||||||||| || | ||||| ||
Sbjct 732 TGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAG 673
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
||||||||||| || | ||| | ||| | ||||| | ||| | | ||
Sbjct 672 GTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCA 613
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
||||| |||||| |||||||| | ||||| | || || || |||||||| ||||||
Sbjct 612 ATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCG 553
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780
|| ||||| ||||||| || | || ||||| || || || | | | ||||||
Sbjct 552 ATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCG 493
Query 2073781 GCATTGAAGAGCGTGGG 2073797
|| ||||||||||| ||
Sbjct 492 GCGTTGAAGAGCGTAGG 476
Score = 91.5 bits (100), Expect = 2e-12
Identities = 354/547 (65%), Gaps = 32/547 (6%)
Strand=Plus/Minus
Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310
||||||||||| |||||||||| ||| |||| | | |||||||| |||||||||||
Sbjct 2133 TGGTCGACGGTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCC 2074
Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC---ATTC 2069367
||||| || ||| | ||| | | |||||| ||||| || | | | |
Sbjct 2073 GTCTTCAGACCGAGCTTCCAACCAGCGAAGTGCATGCTGGTGAT---CTTGCCCATAGTT 2017
Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427
||| | || || ||| |||||||| |||||||| ||| | ||||||||
Sbjct 2016 GGGTCCTTCATGTGGATGTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCA 1957
Query 2069428 GCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTG 2069484
||||| | ||| ||| |||| | ||| | ||||| ||||||||| |||| || |||
Sbjct 1956 GCCATCTGCACGACGGT-ACGCTG--GGAGATTTCCCAAACGGTCTTGTACAGTGCTTTG 1900
Query 2069485 AGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGG 2069544
| | | || | | | | | | ||| | || || | | | || || |
Sbjct 1899 ACCTCGGTAGGAATGTTGGGG------ATGTTCTGAATAGAACCGTTCTCGGCAATAATA 1846
Query 2069545 CGGT-CGCGAAAG--TCGGGCGTCCACAGGCCGCGCGCCATC-ATGCGCTCGACCAGGTG 2069600
|||| | | || |||| | |||||||| ||| | | | || || | |
Sbjct 1845 CGGTTCTTCATAGCATCGGAC---CACAGGCCCAT----ATCGACGAGGTCCTTCAAGAG 1793
Query 2069601 GC---GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGT 2069657
| ||||||| || ||| ||||| | || || |||||| ||||| || ||
Sbjct 1792 CCAAGGGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGT 1733
Query 2069658 GATGACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAG 2069717
| | |||| | ||| ||||||||| |||||| || || |||| || |||||| |
Sbjct 1732 GTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGG 1673
Query 2069718 CGCCACGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCA 2069777
||| || ||||| |||||||| | |||| ||| | | || || ||| || |||||
Sbjct 1672 CGCGACAAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCA 1613
Query 2069778 GTCCCAG 2069784
|||||||
Sbjct 1612 GTCCCAG 1606
Score = 86.0 bits (94), Expect = 1e-10
Identities = 161/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 2070010 TAGGGTCCCTCCTTTGCGGCCAGTTGTGCCGACGCCGTCGCCGCCGCATGGTAGATCGTC 2070069
||||| ||||||| ||||| || ||||| || || || |||||||| |||
Sbjct 1530 TAGGGACCCTCCTCCCTGGCCAACTGCACCGACATGGTAAGGGCAGCGTGGTAGATTGTC 1471
Query 2070070 TCAAAGATGGTGCGGTTGAGGCGACGCGCGCCGGCGCTCTCCCACGGCAGGTCCATCATG 2070129
|| || || | ||||||| ||| || ||| | ||| | |||| | | |
Sbjct 1470 TCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGCATGCGGAGA--G 1413
Query 2070130 GCAA--ACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCG 2070187
||| | || ||||| || ||||| || |||| || || || |||||||||| |||
Sbjct 1412 CCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGC 1353
Query 2070188 AGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTT 2070242
|| || ||||| | |||||||||||||||| |||||| | | |||||||||
Sbjct 1352 TGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTTGAGGTT 1298
>seq90
Length=51520
Score = 105 bits (116), Expect = 1e-16
Identities = 97/120 (81%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| ||||||| || | || | |||| ||||||| ||||||||| ||
Sbjct 5522 GTGTCAATGGCGTTGAAGAGGTACGTGCG-CTGGGCCGGCTCCTTGATGTAGGTGTCAAT 5580
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| | |||||||||||| ||||||||||| || || ||||||||||||||| |||||
Sbjct 5581 GAGCAACGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCA 5640
Score = 91.5 bits (100), Expect = 2e-12
Identities = 178/259 (69%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | || ||| ||| || ||||||||||| || | |
Sbjct 4936 TGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCA 4995
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | || ||||||| | | |||| ||| ||| || |
Sbjct 4996 GGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAA 5055
Query 794011 GCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
| | | |||| ||||||||||||||||| ||||||||||| ||| ||| || ||||
Sbjct 5056 GGGCAACCAAG-AGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTC 5114
Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
||||||| || || || || | ||| | | ||||| | || |||| ||| ||
Sbjct 5115 ATGCCGAGCAGGGCACAAGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCG 5174
Query 794130 TCGATGATGATCTGCCTGG 794148
|||| || || | |||||
Sbjct 5175 TCGACAATAATGT-CCTGG 5192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915347003086745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |