Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1955 143 2e-29 seq460 116 2e-21 seq395 111 1e-19 >seq1955 Length=8910 Score = 143 bits (158), Expect = 2e-29 Identities = 165/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 3776 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 3717 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||||||||||||||| || |||||||| | || | ||||||||||| Sbjct 3716 CTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 3657 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || || | ||| | Sbjct 3656 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGA 3601 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| |||||||||||||| || |||||||||||||| Sbjct 3600 TAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 3561 >seq460 Length=27106 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || | |||| |||| ||||| |||||||||||||| Sbjct 24582 CTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 24523 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||| || | || | ||||||||||| | || || ||||||| Sbjct 24522 AATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTGACGTT 24463 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||||| || | || ||||||||||| || | |||||| || Sbjct 24462 GTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTGAC 24403 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 24402 AAAGATCTGCAT 24391 Score = 96.9 bits (106), Expect = 2e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 24374 AGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 24315 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || ||||| || | || | ||||||||||| Sbjct 24314 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCC 24255 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| || |||||| || | || |||||| Sbjct 24254 TGGATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTC 24195 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 24194 TTGCCGGTGA 24185 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||||||||||||| || || ||| |||| | || Sbjct 24830 AGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCC 24771 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| || || || || || |||||||| | || | |||||||| || Sbjct 24770 TCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 24711 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || | || | ||| || || | || || ||| Sbjct 24710 TGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTC 24651 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| || ||||| ||||| Sbjct 24650 TTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 >seq395 Length=29552 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| | || |||| || || ||||| |||||||||| Sbjct 1186 CCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1127 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | ||||||||||| | || || ||||| Sbjct 1126 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1067 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 1066 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 1007 Query 34968 A 34968 | Sbjct 1006 A 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325659238883645