Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1012 304 1e-77 seq1955 143 3e-29 seq460 107 2e-18 seq395 104 2e-17 >seq1012 Length=16087 Score = 304 bits (336), Expect = 1e-77 Identities = 1003/1541 (65%), Gaps = 45/1541 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || |||||||||||||| || || || || ||| |||| | || || | || Sbjct 1785 TTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGC 1726 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || |||| ||||||||||| ||||| | ||| | || || |||||| ||| || Sbjct 1725 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACA 1666 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| |||||||| | |||| | | || || | ||||||||| ||||||||||| Sbjct 1665 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAG 1606 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || ||| || | || ||||||||||||||||| || ||||| | | | ||| Sbjct 1605 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 1546 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCG 148557 |||||||||| ||| || || | | || |||| | ||| | | | | || | Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACT-GCA-CCGACATGGTAAGGG 1488 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGCCGACTCGCTTT 148614 | ||| ||| || |||||| || | | ||||||| || | || | | | | Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGG---GGGACT 1431 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 | | ||||| || || || || || |||||||| ||||| || || | ||||||| Sbjct 1430 CAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGG 1371 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGA 148734 | ||||| |||||| | ||| || || || ||| ||||||||| |||||| | Sbjct 1370 GGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAA 1311 Query 148735 TCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA-- 148792 | ||| || || || || || |||| || | | | ||| | || ||||| Sbjct 1310 TTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGA 1251 Query 148793 -------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGG 148845 |||| || |||| | | || || ||||| ||||| || || || || | Sbjct 1250 CACCCTCGTTGTAGTCAACGAAG-GTGGG--CAGGGCGAGCGAGGCCAGGTTACATACAG 1194 Query 148846 CCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCA 148905 | |||||| || |||| ||| || | |||||| | ||| || ||| || ||| Sbjct 1193 CGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAG 1134 Query 148906 CGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTC 148965 |||| |||||| || |||||||||| |||| || |||||||| |||||| | || Sbjct 1133 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGT 1074 Query 148966 CGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCACTTGCT 149025 ||| || || ||| | || | ||| | ||| | | | || |||| | Sbjct 1073 TGCCGGTCTCGGTCTGAGCCTCGAGAATG--GCATACCAGAGCTTTTGGGC---CTTGAT 1019 Query 149026 GCTCGTAGCGACCCT------CCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGC 149079 | || | |||||||| ||||||||| ||||| ||||||| |||| | Sbjct 1018 GGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCC 960 Query 149080 CGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCG 149139 ||||||| ||| | ||||| || |||| || ||||||||||| | ||| | |||| | Sbjct 959 CGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCT 900 Query 149140 CGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 149199 | ||| | |||||| || |||||||| | ||| || ||| | |||||||| || Sbjct 899 TCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGC 840 Query 149200 TGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCC 149259 | || || ||| ||| ||| || | | | | ||| | ||| ||||||| Sbjct 839 GGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCC 780 Query 149260 ACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGC 149316 | ||||| | ||| | || | || || |||| ||||| || |||||||||| || Sbjct 779 AAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGC 720 Query 149317 GCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGT-A 149375 | | |||| || || || || | ||| || | | || | | || ||||| || Sbjct 719 GAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGC 660 Query 149376 GAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCG 149435 ||| |||| | |||| || || | ||| || |||| || ||||| ||| | Sbjct 659 CAGC-AATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCC 601 Query 149436 TACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGC 149495 || ||||| |||||| ||| || |||||| |||||||| ||| | Sbjct 600 ATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCC 541 Query 149496 TTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATG 149555 ||||| | || ||||| ||| ||| || | | | |||||||| ||| | Sbjct 540 TTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGC 481 Query 149556 GTGGGGCTGGCGTGTGTAAA-ATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCG 149614 || || |||||| ||||| | || || | ||||| | ||| | |||| ||||| Sbjct 480 GTAGGAGAGGCGTGAGTAAAGAACTTGCTCG-ACATCAGGTTGTAGGTTTCGATGACGCG 422 Query 149615 GTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 || | ||||||||| |||||| | ||||| ||||| | ||| ||||| |||| ||| Sbjct 421 TTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTC 362 Query 149675 CGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT--AGTGTCTTGTAGCCAAAG 149732 || | ||| ||| || || | ||| || | ||| | |||||| |||| ||| Sbjct 361 GGCAATCTTGCCGTCAAGCTTCAGGAGGTA--CGATCTCTCCAAGGTCTTGAAGCCGAAG 304 Query 149733 TACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 || | |||| ||||||||| ||| | | ||||| | ||| Sbjct 303 TATTGATAGTTGAAGTCGCGGTCGTAGACGATGGCAGAGTC 263 >seq1955 Length=8910 Score = 143 bits (158), Expect = 3e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||||||||||||||| || Sbjct 3761 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 3702 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 3701 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 3642 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| |||| ||||| || ||||| || || || Sbjct 3641 GACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 3582 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3581 CTTCACGAAGATCTGCATG 3563 >seq460 Length=27106 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||||| || ||| ||| |||||| |||||||| || Sbjct 24815 GTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACC-GTCCTCCAGCTGCTTTCC 24757 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| ||||||||||| |||||||| || ||||| || ||||| || Sbjct 24756 AGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGAATCTTGGATTT 24697 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | ||| || |||| || | || |||||||||| || Sbjct 24696 AACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTCTTGCCGGTCAAGGT 24637 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 24636 CTTGACGAAGATTTGCAT 24619 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||| ||||| || ||||| ||| | ||| |||||| ||| Sbjct 24368 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGC 24309 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || || |||||||| ||||| ||||| || |||||||| |||| Sbjct 24308 TGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATC 24249 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || || | || ||| || |||| |||| ||| |||||| Sbjct 24248 TTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTCTTGCCG 24189 Query 133635 GT 133636 || Sbjct 24188 GT 24187 >seq395 Length=29552 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | ||||||||||| || |||||||| |||||| Sbjct 1151 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 1092 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | || ||| || || | ||| | | Sbjct 1091 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAATG 1032 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || || || ||||| || || |||||| Sbjct 1031 GTCTTACCCGTCAGGGTCTTCACGAAA 1005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483369708464200