Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq460 93.3 1e-13 seq1012 86.0 1e-11 >seq460 Length=27106 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || ||||| | || || ||| || ||| Sbjct 24394 CAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCCGAC 24453 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || || ||||| || || || || || ||| || || || Sbjct 24454 ACCATTGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAGCAG 24513 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||||||||||||| |||||||||| | |||||| |||| |||||| | Sbjct 24514 CGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAACATT 24573 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| |||||||| Sbjct 24574 CAGAAGGAGTCGACTCTCCACCTTGT 24599 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||| ||||| | || ||||| | |||||| | ||||||||| Sbjct 24599 ACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCC 24540 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||||| || | || || ||| Sbjct 24539 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGA 24507 >seq1012 Length=16087 Score = 86.0 bits (94), Expect = 1e-11 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 173079 GTGCTTTTGGTTATTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACCAAC 173138 || ||| ||||| | |||||| || |||||||||| |||||||| | || Sbjct 1126 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGT 1067 Query 173139 CTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT-CG 173197 ||| | |||||| | | |||| | ||| || | |||||| || | ||| | | | Sbjct 1066 CTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGCGACC 1007 Query 173198 CTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGT 173257 || || ||| | |||| |||| || ||| ||||| |||| |||||| ||| Sbjct 1006 CTTGCCCATCTGCT-CGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGG 948 Query 173258 CAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCT 173317 ||||||| ||| || || || || | |||| |||| | ||| | |||| || |||| Sbjct 947 CAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCT 888 Query 173318 TCATGAAGAGGTCGGAAGTCCAAA 173341 |||||||||| |||| |||||| Sbjct 887 TCATGAAGAGATCGGGGATCCAAA 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181692773722055