Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1012 122 8e-23 seq1955 84.2 2e-11 >seq1012 Length=16087 Score = 122 bits (134), Expect = 8e-23 Identities = 971/1545 (63%), Gaps = 59/1545 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || ||||||||||| || || ||||| | |||| | ||| ||| | ||| Sbjct 1785 TTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGC 1726 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || ||||||| ||||| || || || | ||| | || || |||||| ||| || Sbjct 1725 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACA 1666 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | ||| | ||||||| || | ||||||||| Sbjct 1665 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAG 1606 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | ||||||| | || |||||||||||||||||||| | || || | || Sbjct 1605 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 1546 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGT-CGCGCTGCGCCAA-TTCACAG-CTTGCCTCGAGC 147189 || || |||| |||| || | | | ||| ||||| | ||| | | || || Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCCTCCCTG-GCCAACTGCACCGACATG--GTAAGG 1489 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || | | ||| || || ||| || | ||||| ||| | ||||| | ||| Sbjct 1488 GCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCA 1429 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 | ||||| || ||| || ||||||||||| | |||||| | ||||| || || || Sbjct 1428 AAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGG 1369 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAA 147367 || || |||||| | | || || || | || ||||||||| || |||| Sbjct 1368 CGGTGGCGCATGTTGCT--GTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAA 1311 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425 | ||||||||||||| || || || | || | | ||| |||| ||| || || Sbjct 1310 TTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGA 1251 Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | | ||| | | || ||| | | || ||||| || ||||| || || || | Sbjct 1250 CACCCTCGTTGTAGTCA---ACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAG 1194 Query 147485 CCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 | ||| || |||| ||| ||| | | ||| || | ||| |||||| || || Sbjct 1193 CGACCTCATCAGGCG-CGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATA 1135 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 |||| || | ||| ||||| || || ||| || || ||| |||||||| | || Sbjct 1134 GTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGG 1075 Query 147604 CCGCCGGTCTCGACTTGCGTTTC---AACGATAAACCTATGC---AGGTCC----TGCGC 147653 |||||||||| || | || || | | ||| || || || || | Sbjct 1074 TTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTC 1015 Query 147654 TCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTC 147713 | || || |||| || | || |||||| |||||||| ||| ||||| Sbjct 1014 TTGCGACCCTTGCCCAT--CTGC--------TCGTACTTCTCGTACAGGGTCTCGAACTC 965 Query 147714 GTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTC 147773 || |||||||| |||||||| || ||||||| | || ||||| || | ||| | Sbjct 964 CTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCC 905 Query 147774 GTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG 147833 || | | || | ||| || ||||| || | ||| || ||| | ||| ||||| Sbjct 904 GTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCG 845 Query 147834 CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAA-AT-TAAGCACGCTATAGATGTCG 147891 || | ||||| | ||||| | | | || || ||| | | | ||| ||| Sbjct 844 GGCGCGGACCTCCTCCTTG-CCATGGTTCTTGCGAAGATCCAAGAAGTCGA-AGACGTCA 787 Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCG 147948 |||||||| || || | ||| | || | ||||| ||| || || || |||||| Sbjct 786 GCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCG 727 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 || | ||| | |||| || || || || | |||||| | | ||| | | || ||| Sbjct 726 ACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCG 667 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| | || | |||| || || | ||| || || | |||||||| Sbjct 666 TTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCA 607 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 ||| | || || || |||||| | || |||||| || ||||| | Sbjct 606 CCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAG 547 Query 148129 TCGTTTTTGA---CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCC 148185 || | || | || |||| || || || ||| || | | || || || Sbjct 546 TCCTCCTTCATATCGACAAG---GAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCG 490 Query 148186 GAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCT 148243 ||| || || ||| ||||| ||||| || || | || ||||| | || || | Sbjct 489 TTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGA--CATCAGGTTGTAGGTTT 432 Query 148244 CAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCT 148303 | || || ||| | ||| ||||| ||||||| ||||| ||||||| |||||||| Sbjct 431 CGATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCT 372 Query 148304 GTGGTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCAT-TTTCGAGGGTTTT 148361 | |||| ||||||| |||| || | ||| || || || | || | || | ||| || Sbjct 371 GAGGTCTCTCGGCAATCTTG-CCGTCAAGCTTCAGGAGGTA-CGATCTCTCCAAGGTCTT 314 Query 148362 GTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 | | || ||||| | || | || || | ||||| ||||||| Sbjct 313 GAAGCCGAAGTATTGATAGTTGAAGTCGCGGTCGTAGACGATGGC 269 >seq1955 Length=8910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||||| || || |||||||||||| || ||| Sbjct 3785 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3726 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || |||| |||| || ||||| || || || || ||||| Sbjct 3725 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 3666 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| || |||||| |||| Sbjct 3665 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAG 3606 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || | || || || || || || || | ||| |||||||||| Sbjct 3605 GGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGA 3562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476560828153800