Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq162 107 2e-18 >seq162 Length=42721 Score = 107 bits (118), Expect = 2e-18 Identities = 338/530 (64%), Gaps = 44/530 (8%) Strand=Plus/Minus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||| ||| | ||| |||| || ||||||| | ||||||||| || || |||| | || Sbjct 18380 CCAACTGCACTTTGAGGGCATCAACGTGGTCGGCGTAGACGTGTGCATCGCCCATGACGT 18321 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025 | | | || || ||| || || |||| | ||||| || ||||||| || Sbjct 18320 GAGTCAGGCTGCCGGGGACGAGGTCGCATGCGCGGGCAATCATGTGCGTCAGCAGCGCGT 18261 Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085 |||| || |||||||| || || || ||||||||||| | |||| |||||||||||| | Sbjct 18260 AGCTCGCGATGTTGAAAGGCACTCCGAGGCCCATGTCGCAGGACCGCTGGTACAGCTGAC 18201 Query 147086 A--CGAGA-------------GCTCCCCGTCGGC-------------------------- 147104 | ||| |||||||||||| Sbjct 18200 AGTGCAGATGGCCCTTGGGCTTCTCCCCGTCGGCGGGTGCGCTGCGCGCCCGCGGGTAGG 18141 Query 147105 -CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 ||||| ||||| ||| | |||||||| || ||||| ||||| || |||||| Sbjct 18140 AGACGTAGAACTGCGCA-AACATGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCG 18082 Query 147163 GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATA 147222 |||||||| || || | | || | | | ||||| |||| | | | |||| Sbjct 18081 GGGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGGTTTGTCTTGAGTTTGTGGATA 18022 Query 147223 ACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTG 147282 ||| || ||||| |||||||| ||| ||||| ||| | ||| |||||| | Sbjct 18021 ACCTCGGCAAGTTGGTCGACGCCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCG 17962 Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || |||||||| | ||| ||||| || || || || || || |||||| | || |||| Sbjct 17961 GCGCCAAAGTGTCGCCATTGGAACCCATAGACAGGGCCGAGATCGCCGACTTCTCGGTGC 17902 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 |||| ||| | | | || ||||| | || |||| ||||||| || Sbjct 17901 GAGAGGCCGACGCTGTCAAGGAACTCACGCGAGCCGTTACCGTCCCAAAT 17852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583426332612000