Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq90 140 5e-27 seq1012 132 7e-25 seq2708 91.5 2e-12 seq3 89.7 7e-12 seq53 86.0 9e-11 >seq90 Length=51520 Score = 140 bits (154), Expect = 5e-27 Identities = 239/340 (70%), Gaps = 15/340 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC- 1455833 ||| ||| | |||||| || ||||||||||||||||| ||||| || |||||| | || Sbjct 5854 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGATT 5796 Query 1455834 ---CTCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| | | | ||| || ||| | ||| Sbjct 5795 TGTCTAAGGACCTGCACG----ACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTC 5740 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||| | |||||||| || |||||| ||| |||||||| |||||| ||| Sbjct 5739 ATCTCGCACATTCTCGCCTTCTT-CGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGT 5681 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | ||||| || |||| ||||| |||| || || || |||||||| Sbjct 5680 CGAGCGCTTCAGCGGCGAGGTTCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAGAT 5621 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || ||||||||| | || || ||||||||| ||||||| Sbjct 5620 CATGATGGAGAACATCCACTCCGAGACCTACTCGTTGCTCATTGACACCTACATCAAGGA 5561 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 |||| | || | || ||||||| |||||| ||||| Sbjct 5560 GCCGGCCCAG-CGCACGTACCTCTTCAACGCCATTGACAC 5522 Score = 86.0 bits (94), Expect = 9e-11 Identities = 114/156 (73%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| | |||||||| | | | ||| | |||| ||| ||| | Sbjct 5446 AAGAAGGCCGACTGGGCTCTCAAGTGGATTAGCGATGAGAAGTCCTC----CTTCGCCCA 5391 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| || || | || || || |||||||| || || ||| ||| || | | || Sbjct 5390 GCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTAT 5331 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| || |||||||||||||| Sbjct 5330 CTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 5295 >seq1012 Length=16087 Score = 132 bits (146), Expect = 7e-25 Identities = 206/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 259895 ATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| |||| ||| || || ||| || | || |||||||| || |||||||| || | Sbjct 446 ATGTCG-AGCAAGTTCTTTAC-TCACGCCTCTCCTACGCTCTTCAACGCCGGCACCCCTC 503 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 | ||| || || ||||| || | || ||||||| || || |||||||| |||| Sbjct 504 AGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATATGAAGGAGGACTCTATCGAGGGTATCT 563 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| |||||| ||||| | |||||||| |||||| ||||| ||| | | Sbjct 564 ACGACACCCTCAAGACCTGCGCTATGATCTCCAAAATGGCCGGTGGCATTGGTCTCAATG 623 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | ||||| | ||| | ||| | || ||||||||||| || ||||| Sbjct 624 TCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCAACGGTACCTCTAACGGTG 683 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 | || |||||||| || || || || |||| || |||||||||||||| Sbjct 684 TCGTTCCCATGCTCCGTGTCTTCAATAACACTGCTCGCTACGTCGACCA 732 Score = 98.7 bits (108), Expect = 1e-14 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| |||||| ||| ||| || | ||||||||||| |||| |||| |||||| Sbjct 1032 AGCTCTGGTATGCCATTCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCTCTACA 1091 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210 |||| || | ||||| | ||||||||| |||||||||| || | | || ||||| Sbjct 1092 AGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACTATCCGTAG-CTCCAAC 1150 Query 262211 CTGTGCACCGAGATCGTC 262228 || ||||| |||||| || Sbjct 1151 CTCTGCACTGAGATCATC 1168 >seq2708 Length=6177 Score = 91.5 bits (100), Expect = 2e-12 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||||||| | || || | ||| Sbjct 2590 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 2649 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 2650 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 2708 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 2709 CATCGGCGCCGCCGCC--GCCAAGCACC 2734 >seq3 Length=97984 Score = 89.7 bits (98), Expect = 7e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| |||||||||||| | || | |||||| ||||| ||||| ||| | || Sbjct 77807 CATCGACACGGGCGCCGGCGTCATCGACGCCGACTACCGCGGTGAGGTCAAGGTCCTCCT 77866 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644 |||||||| |||| ||||||| | |||| | |||| ||| |||||||| | | Sbjct 77867 CTTCAACCACGCCGAAGCCGACTTCGAAGTCGCCGAGGGCGACCGCGTCGCCCAGCTCGT 77926 Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704 ||| || || | ||||||| ||| ||||||| || || | | || ||| Sbjct 77927 CGTAGAGCGCATCTTCACTCCCGAGATCGTCGAGGTCGACGAGCTCGAGGCGAGCGTGCG 77986 Query 334705 CGGCACCGGCGGCTTTGG 334722 ||| |||||||||| || Sbjct 77987 TGGCGCCGGCGGCTTCGG 78004 >seq53 Length=57647 Score = 86.0 bits (94), Expect = 9e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 332857 GTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCAT 332916 ||| ||||| || || | || |||||||| || || ||| || | ||| || | | | Sbjct 26051 GTCGGTGAGCCGGGCATACCGGAGGATGGCGCATCGCGACTGTAGCGGCTCAATAATCTT 25992 Query 332917 TGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGA 332976 ||| ||||||||| | ||| || |||||||| |||| | | ||||| || Sbjct 25991 GTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATCGTTCG 25932 Query 332977 CCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTT 333036 || ||||| || ||||| | | || | || ||||||||||||||| || | | ||| Sbjct 25931 GCGAAGGGCTTGCTGGGCACCTGATGTCATGCTGTCGGCCTCGTCGAGAATCACAAGCTT 25872 Query 333037 GTGGCGCCCGTGCGGCA 333053 |||||| || || |||| Sbjct 25871 GTGGCGGCCCTGGGGCA 25855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176995699709710