Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1012 113 6e-20 >seq1012 Length=16087 Score = 113 bits (124), Expect = 6e-20 Identities = 374/581 (64%), Gaps = 8/581 (1%) Strand=Plus/Minus Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 |||||||| || || || ||||| | | ||| | | | | || |||| ||||| Sbjct 942 CCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATG 883 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || |||||||| ||||||||||| | || || || | || | || || || || Sbjct 882 AAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCA 823 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || |||||| | || || | | |||| ||||| || || || || || Sbjct 822 TGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATA 763 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | || || || || || || || || || | ||| | ||||||||||| || Sbjct 762 GCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAG 703 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || | ||||| |||| | ||| ||||| |||| || || |||| ||| ||| || Sbjct 702 ACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 643 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | ||||| || | | ||||| || || || |||||||| ||||| | ||| Sbjct 642 GTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCG 583 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || || | ||||| || |||||||| || || || |||| | | ||| || Sbjct 582 CAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAG 523 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 || |||| ||| || || || || || || | |||||||| |||||||| Sbjct 522 CAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTA 463 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC----CCACTG 70082 || | || || | ||| ||||| ||||| || | ||| | || || | | Sbjct 462 AAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAG 403 Query 70083 ATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 ||| || | ||||||||||| | ||| |||||||||| Sbjct 402 ATG----CCCACAGCGACACGCATGATCATGTGCTGAGGTC 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686836202326200