Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1012 111 5e-19 seq90 111 5e-19 >seq1012 Length=16087 Score = 111 bits (122), Expect = 5e-19 Identities = 217/313 (69%), Gaps = 12/313 (4%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| ||||||| ||||| ||| |||||||||||||| ||||| ||| ||| ||| Sbjct 689 CCCATGCTCCGTGTCTTCAATAACACTGCTCGCTACGTCGACCAAGGTGGCAACAAGCGC 748 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC--ATTGAACGGTTTTTAC 255098 || || || || | || ||||| ||||| |||||||| ||| || || || || Sbjct 749 CCCGGTGCTTTTGCTATTTACCTCGAGCCTTGGCACGCTGACGTCTTCGAC--TTCTT-- 804 Query 255099 TGCTGTCCGACAAGACC---GGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 | | | || ||||| | |||| |||||| | |||||||||| | | | |||| Sbjct 805 GGATCTTCG-CAAGAACCATGGCAAGGAGGAGGTCCGCGCCCGCGACCTTTTCCTCGCTC 863 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATG 255214 | ||| | |||||| || ||| | ||||| | || |||| ||||| |||||| Sbjct 864 TTTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGAACGGAGA-CTGGACTCTCATG 922 Query 255215 TGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTAT 255274 || |||||| | || ||||| | ||||| | || || ||||| || | ||||| Sbjct 923 TGCCCCAACGAGTGTCCTGGTCTTGCCGACTGCTACGGGGAGGAGTTCGAGACCCTGTAC 982 Query 255275 CTGGAGTACGAGC 255287 | ||||||||| Sbjct 983 GAGAAGTACGAGC 995 >seq90 Length=51520 Score = 111 bits (122), Expect = 5e-19 Identities = 125/166 (75%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| | |||| || || || || |||| ||||| || | || || || ||| ||| Sbjct 5399 CTTCGCCCAGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTT 5340 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||| ||||||||| | || |||||||| || |||| |||||||||||| || | Sbjct 5339 T-GCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATG 5281 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | || ||| ||| ||||||||| |||| |||||||||||| || Sbjct 5280 AGCTTATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCT 5235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588163936057475