Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1012 138 1e-27 seq90 107 2e-18 >seq1012 Length=16087 Score = 138 bits (152), Expect = 1e-27 Identities = 936/1489 (63%), Gaps = 35/1489 (2%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 ||||||| | | |||||| || || || | |||||| || | ||| |||||| Sbjct 1840 CTTCATAGCATCGGACCACAGGCCCATATCGACGAGGTCCTTCAAGAGCCAAGGGTTGAC 1781 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 | |||||| || || ||| | | | | ||||| || | ||||| || || || Sbjct 1780 TACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAA 1721 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 ||| ||||| || |||||||| || | |||| ||| || ||||| || || | | || Sbjct 1720 GCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAG 1661 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 | ||| || | ||| | || |||||| | ||||| ||| |||||||||| || || Sbjct 1660 AGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAGA-GAT 1602 Query 110854 CTT--GGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCC 110911 | || || || |||| ||||||| |||| || | || || || | || |||||| Sbjct 1601 CCGAGGGCTTAACATTCC-ACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCC 1543 Query 110912 TCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGC 110970 || | || || |||| ||| | | ||||| | ||| | | |||| || Sbjct 1542 TCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACTGCACCGACATGGTA-AGGGCAGC 1484 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || || || || || || || | || ||||| || ||||| | Sbjct 1483 GTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGG 1424 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 |||| | || |||| || ||||| |||||||| | |||||| || | ||| Sbjct 1423 CATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTG 1364 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 111150 ||||| || || || || || || || || || ||| || | || ||| Sbjct 1363 GCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTT 1304 Query 111151 TAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT 111210 || || ||| | || |||| || || || || | | || | | | Sbjct 1303 GAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACC 1247 Query 111211 CTCTTCATTGACAT---ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 111267 ||| | | | || | | || ||||||| || |||| || || ||||| ||| Sbjct 1246 CTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTC 1187 Query 111268 ATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327 ||| | ||| || | || || || || | |||||| || || || |||| Sbjct 1186 ATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAG 1127 Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387 ||||| ||||| ||||| |||| |||||||||||||||||| |||| | || || Sbjct 1126 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGT 1067 Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG 111446 ||| ||||| | | |||||| || | ||| | | | | | || | |||| ||| Sbjct 1066 CTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTG----ATGGTCTTGC 1011 Query 111447 --CCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 111502 ||| | ||| | ||||||||| ||| |||| || |||||||| ||| || | Sbjct 1010 GACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTC-CCCGTAGCAG 952 Query 111503 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACC 111562 |||| ||||| || || || || || | |||| ||| | || | ||| || Sbjct 951 TCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACT 892 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTCTACACCGAGCCT 111620 | ||||||||| || || || ||||| || | | |||||| || | || ||| Sbjct 891 CTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGG--TCGCGGGCGCGGACCT 834 Query 111621 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 111680 | || | || ||||| || | || | ||| || | || || |||||||| |||| Sbjct 833 CCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCT 774 Query 111681 CAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCT 111736 | || || | || | || || | | | ||| | |||| | || ||||| || Sbjct 773 CGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCC-ACCTTGGTCGACGTAGCGAGCA 715 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| || || || || ||||| |||| | ||| | || ||| || || || | Sbjct 714 GTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCA 655 Query 111797 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 111856 || ||| | || | | |||| | | ||||| || || ||| || Sbjct 654 ATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTG 595 Query 111857 GAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTG 111916 ||||| || || | | || || | |||||||| | ||| ||||||||||| | Sbjct 594 GAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATA 535 Query 111917 GCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGT 111976 ||| |||||||||| ||||| ||| | || || || || |||||||| || || Sbjct 534 TCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGA 475 Query 111977 GTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAA 112034 | |||||| | | | | |||| |||||| || ||| || || | ||| |||| Sbjct 474 GAGGCGTGA--GTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAA 417 Query 112035 TGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| || || |||||| | ||||| ||||||| ||||| ||| || Sbjct 416 CGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGG 368 >seq90 Length=51520 Score = 107 bits (118), Expect = 2e-18 Identities = 160/225 (71%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || || || ||||| ||||| |||||| ||||| ||||||||||| Sbjct 5252 GTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCGGGCATGAGACC 5311 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | |||| | || | || |||||| |||||||| || Sbjct 5312 ACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATACCCTCGACGGC 5371 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCAT 122846 || || |||| ||||| | |||||||||| ||||| |||| || ||| || | Sbjct 5372 AGCGAATGCAACCAGGCGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTGAG 5428 Query 122847 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||| | |||||||| ||| || || || || |||||| Sbjct 5429 AGCCCAGTCGGCCTTCTTACGAATGCAAGGAACTGT---GATGGC 5470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627965624868000