Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1012 192 7e-44 seq90 145 9e-30 >seq1012 Length=16087 Score = 192 bits (212), Expect = 7e-44 Identities = 974/1535 (63%), Gaps = 37/1535 (2%) Strand=Plus/Minus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 ||||| || |||||| || || ||| || | | |||||||||| | ||||| ||| Sbjct 1785 TTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGC 1726 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||||||||| |||||||| || | ||| ||| || |||||||| || | Sbjct 1725 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACA 1666 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAG 118322 || || ||| |||| ||| | | | | || | ||||| ||||| |||||||| || Sbjct 1665 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAG 1606 Query 118323 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 118382 | | || | | |||||| || |||||||||| || || || | || || Sbjct 1605 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 1546 Query 118383 CCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGG 118440 ||||| | ||||| || || ||||| || ||||| | | | | | | |||| Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAA--CTGCACCGACATGGTAAGGG 1488 Query 118441 CTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAA 118500 | ||||| || ||||| || || || || | | || ||| ||| |||| Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAA 1428 Query 118501 ACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 118560 | | | ||| | || |||| || ||||| || |||||||| ||||| |||| Sbjct 1427 AGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGC 1368 Query 118561 GATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCC 118620 | || | ||| || || ||||| || || || || || ||||||| | Sbjct 1367 GGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTC 1308 Query 118621 TATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC 118680 | || || || || |||| |||| || || ||||| | | | || | | Sbjct 1307 TGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GA 1251 Query 118681 GAGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGG 118737 | ||| | | | || | | || ||||||| || ||||| ||||| |||| | Sbjct 1250 CACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGA 1191 Query 118738 TCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGC 118797 |||||| | ||| || || || || ||||| | ||| || || || || | Sbjct 1190 CCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTAC 1131 Query 118798 CCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 118857 ||| |||||| || || ||| ||| ||||||||||| |||||| | || | | Sbjct 1130 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGC 1071 Query 118858 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCG 118916 | ||||| || || | || |||||| || | ||||| | | | || | ||| Sbjct 1070 CGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTG----ATGGTC 1015 Query 118917 TTG----GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCAC 118972 ||| || |||| || | ||||||||| ||| |||| || ||||| || || Sbjct 1014 TTGCGACCCTTGCCCATC-TGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTA 956 Query 118973 GGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTC 119032 | || | || || || || | ||||| | ||||| ||| | || || ||| Sbjct 955 GCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTC 896 Query 119033 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 119092 || | |||||||||||| || |||||||| || || ||| || || || ||| | Sbjct 895 CACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGAC 836 Query 119093 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 119152 || || | || || || || | ||||| ||||| | || || |||||||| || Sbjct 835 CTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGG 776 Query 119153 TTCCAGGTACACCGCGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCT 119206 || ||||| | || | | || | ||| | | ||| | |||| || || | Sbjct 775 CTCGAGGTAAATAGCAAAAGCACCGGGGCGCTT--GTTG-CCACCTTGGTCGACGTAGCG 719 Query 119207 CGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCC 119266 |||||| || || ||||| ||||| |||| || ||| | || || || || || Sbjct 718 AGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCC 659 Query 119267 CCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 119326 ||| ||| | || | || ||||| | | |||||| || || ||| Sbjct 658 AGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCAT 599 Query 119327 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 119386 || ||||| ||||| | |||| || ||||||| || ||||| ||||| |||| Sbjct 598 TTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTT 539 Query 119387 ATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAG 119445 | ||| |||||||| |||| ||| ||||| || || || ||||||||||| | Sbjct 538 CATATCGACAAGGAAGCAAGAGGACAGCTGA-GCCTGAGGGGTGCCGGCGTTGAAGAGCG 480 Query 119446 TTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGC 119503 | || | ||||| | | | | |||| |||||| || |||||| || | |||| Sbjct 479 TAGGAGAGGCGTG--AGTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCG 422 Query 119504 GGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTC 119563 || ||| || || || || | | ||| ||||| | ||||| || ||| | || Sbjct 421 TTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTC 362 Query 119564 CATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | || || ||| || ||||||| ||||||||||||||| || || || Sbjct 361 GGCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTA 302 Query 119624 GCCAAAATCGTAGTCCCGCTTCGT-GACGATGTCA 119657 | | | | |||| || |||| ||||||| || Sbjct 301 TTGATAGTTGAAGTCGCG-GTCGTAGACGATGGCA 268 >seq90 Length=51520 Score = 145 bits (160), Expect = 9e-30 Identities = 337/501 (67%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| |||||||| Sbjct 4953 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCAGGGAGATGTTCTCCATG 5012 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| || || | | || | | |||| | ||| || Sbjct 5013 AAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGGGCAACCAAGAGGCG 5071 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||||| |||| ||||||||| |||| ||| ||| Sbjct 5072 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCGAGCAGGGCACA 5131 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||| ||||| | ||||| || | ||| | || Sbjct 5132 AGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCGTCGACAATAATGTCCTG 5191 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || || | ||| || | | ||| | || | ||||| || ||| || || Sbjct 5192 GATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTACAAGAGG--CA-GGCGAAGTC 5248 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| ||||| || ||||| |||||| |||||| |||||||| Sbjct 5249 GGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCGGGCATGAG 5308 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | ||| | |||| |||||| || ||||| || Sbjct 5309 ACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATACCCTCGAC 5368 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200 ||||| |||| || |||| || ||||| |||||| ||| || |||||| Sbjct 5369 GGCAGCGAATGCAACCAGGCGCTGGGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 5425 Query 130201 CATCGCCCACTGCGCCTTTTT 130221 | ||||| | ||||| || Sbjct 5426 GAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618369839129800