Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 192 7e-44
seq90 145 9e-30
>seq1012
Length=16087
Score = 192 bits (212), Expect = 7e-44
Identities = 974/1535 (63%), Gaps = 37/1535 (2%)
Strand=Plus/Minus
Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202
||||| || |||||| || || ||| || | | |||||||||| | ||||| |||
Sbjct 1785 TTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGC 1726
Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262
|| |||||||||||||| |||||||| || | ||| ||| || |||||||| || |
Sbjct 1725 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACA 1666
Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAG 118322
|| || ||| |||| ||| | | | | || | ||||| ||||| |||||||| ||
Sbjct 1665 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAG 1606
Query 118323 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 118382
| | || | | |||||| || |||||||||| || || || | || ||
Sbjct 1605 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 1546
Query 118383 CCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGG 118440
||||| | ||||| || || ||||| || ||||| | | | | | | ||||
Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAA--CTGCACCGACATGGTAAGGG 1488
Query 118441 CTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAA 118500
| ||||| || ||||| || || || || | | || ||| ||| ||||
Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAA 1428
Query 118501 ACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 118560
| | | ||| | || |||| || ||||| || |||||||| ||||| ||||
Sbjct 1427 AGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGC 1368
Query 118561 GATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCC 118620
| || | ||| || || ||||| || || || || || ||||||| |
Sbjct 1367 GGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTC 1308
Query 118621 TATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC 118680
| || || || || |||| |||| || || ||||| | | | || | |
Sbjct 1307 TGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GA 1251
Query 118681 GAGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGG 118737
| ||| | | | || | | || ||||||| || ||||| ||||| |||| |
Sbjct 1250 CACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGA 1191
Query 118738 TCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGC 118797
|||||| | ||| || || || || ||||| | ||| || || || || |
Sbjct 1190 CCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTAC 1131
Query 118798 CCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 118857
||| |||||| || || ||| ||| ||||||||||| |||||| | || | |
Sbjct 1130 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGC 1071
Query 118858 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCG 118916
| ||||| || || | || |||||| || | ||||| | | | || | |||
Sbjct 1070 CGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTG----ATGGTC 1015
Query 118917 TTG----GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCAC 118972
||| || |||| || | ||||||||| ||| |||| || ||||| || ||
Sbjct 1014 TTGCGACCCTTGCCCATC-TGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTA 956
Query 118973 GGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTC 119032
| || | || || || || | ||||| | ||||| ||| | || || |||
Sbjct 955 GCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTC 896
Query 119033 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 119092
|| | |||||||||||| || |||||||| || || ||| || || || ||| |
Sbjct 895 CACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGAC 836
Query 119093 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 119152
|| || | || || || || | ||||| ||||| | || || |||||||| ||
Sbjct 835 CTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGG 776
Query 119153 TTCCAGGTACACCGCGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCT 119206
|| ||||| | || | | || | ||| | | ||| | |||| || || |
Sbjct 775 CTCGAGGTAAATAGCAAAAGCACCGGGGCGCTT--GTTG-CCACCTTGGTCGACGTAGCG 719
Query 119207 CGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCC 119266
|||||| || || ||||| ||||| |||| || ||| | || || || || ||
Sbjct 718 AGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCC 659
Query 119267 CCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 119326
||| ||| | || | || ||||| | | |||||| || || |||
Sbjct 658 AGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCAT 599
Query 119327 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 119386
|| ||||| ||||| | |||| || ||||||| || ||||| ||||| ||||
Sbjct 598 TTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTT 539
Query 119387 ATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAG 119445
| ||| |||||||| |||| ||| ||||| || || || ||||||||||| |
Sbjct 538 CATATCGACAAGGAAGCAAGAGGACAGCTGA-GCCTGAGGGGTGCCGGCGTTGAAGAGCG 480
Query 119446 TTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGC 119503
| || | ||||| | | | | |||| |||||| || |||||| || | ||||
Sbjct 479 TAGGAGAGGCGTG--AGTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCG 422
Query 119504 GGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTC 119563
|| ||| || || || || | | ||| ||||| | ||||| || ||| | ||
Sbjct 421 TTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTC 362
Query 119564 CATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623
| | || || ||| || ||||||| ||||||||||||||| || || ||
Sbjct 361 GGCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTA 302
Query 119624 GCCAAAATCGTAGTCCCGCTTCGT-GACGATGTCA 119657
| | | | |||| || |||| ||||||| ||
Sbjct 301 TTGATAGTTGAAGTCGCG-GTCGTAGACGATGGCA 268
>seq90
Length=51520
Score = 145 bits (160), Expect = 9e-30
Identities = 337/501 (67%), Gaps = 14/501 (3%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| ||||||||
Sbjct 4953 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCAGGGAGATGTTCTCCATG 5012
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| ||||| ||||| || || | | || | | |||| | ||| ||
Sbjct 5013 AAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGGGCAACCAAGAGGCG 5071
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||||||||||| |||| ||||||||| |||| ||| |||
Sbjct 5072 GTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCGAGCAGGGCACA 5131
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| ||| ||||| | ||||| || | ||| | ||
Sbjct 5132 AGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCGTCGACAATAATGTCCTG 5191
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| || | ||| || | | ||| | || | ||||| || ||| || ||
Sbjct 5192 GATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTACAAGAGG--CA-GGCGAAGTC 5248
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||||||||| ||||| || ||||| |||||| |||||| ||||||||
Sbjct 5249 GGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCGGGCATGAG 5308
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | ||| | |||| |||||| || ||||| ||
Sbjct 5309 ACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATACCCTCGAC 5368
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
||||| |||| || |||| || ||||| |||||| ||| || ||||||
Sbjct 5369 GGCAGCGAATGCAACCAGGCGCTGGGCGAAGGA---GGACTTCTCATCGCTAATCCACTT 5425
Query 130201 CATCGCCCACTGCGCCTTTTT 130221
| ||||| | ||||| ||
Sbjct 5426 GAGAGCCCAGTCGGCCTTCTT 5446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618369839129800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |