Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq460 163 9e-35 seq990 129 2e-24 seq713 113 1e-19 >seq460 Length=27106 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || ||||| ||||| || ||||| || | Sbjct 24625 TTTGCATACCACCACGGAGACGAAGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGT 24566 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || |||||||| || || ||||| || || || | ||| ||||||| Sbjct 24565 AGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGAT 24506 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || ||||| || || | ||| || || ||||| | || |||| Sbjct 24505 CGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCAATGGTGTCGGATG 24446 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| | ||||||||||| | || || ||||| |||||||| Sbjct 24445 ATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24391 Score = 125 bits (138), Expect = 2e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | || || || ||||| || ||||| || ||||| || || Sbjct 24852 TTACTGACCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTA 24793 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 ||| | || || || || || || || ||||||||||| || ||||| ||||| || Sbjct 24792 ATCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTC 24733 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 |||||| || || || ||||| ||||| || | ||| || || || || | || |||| Sbjct 24732 AGGAGGGATACCCTCCTTATCTTGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGA 24673 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || |||| ||||| ||||| | || || || || || ||||| Sbjct 24672 CTCAACCTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 Score = 107 bits (118), Expect = 6e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 24393 CATACCACCACGGAGACGAAGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 24334 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || || ||||| ||||| ||||| |||||||| || Sbjct 24333 GGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGG 24274 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | |||||| | || Sbjct 24273 GGGGATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTC 24214 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || || || || | ||||| ||||| | |||| Sbjct 24213 GACCTCGAGAGTGATGGTCTTGCCGGTGACTGTT 24180 >seq990 Length=16340 Score = 129 bits (142), Expect = 2e-24 Identities = 464/723 (64%), Gaps = 2/723 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 |||||| | || || || ||||| || || || |||||||| || || || || || Sbjct 13890 GCTGTTGTCACCGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCGACCAAGGACGCC 13949 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || ||||| || | || || || | || || || || |||||||| || || || Sbjct 13950 GGTCTTATTGCCGGCCTCAACGTCCTTCGCATCATCAACGAGCCCACTGCGGCTGCCATC 14009 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || ||| || |||| || || ||| | ||| Sbjct 14010 GCCTACGGTCTTGACAAGAAGGCCGAAGGTGAACGCAACGTTCTCATCTTCGATCTTGGT 14069 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| ||||| || || || || || | Sbjct 14070 GGTGGTACCTTCGATGTGTCCCTTCTGACCATTGAGGAGGGCATCTTCGAGGTCAAGTCC 14129 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || |||||||| || || | ||||| || || || ||||| |||||||| || || Sbjct 14130 ACCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGATAACCGTCTCGTCAACCACTTC 14189 Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 || || || || ||||| ||||| || | || | || | | || |||| Sbjct 14190 GTCAACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCACCAACGCCCGCGCTCTGCG 14248 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 || || | || || || || ||||| ||||| || | || || | |||| ||||| Sbjct 14249 CCGTCTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCCGCCCAGACCTC 14308 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||| || || || || || || || | || |||| | || || || ||||| || Sbjct 14309 TATCGAGATCGACTCGCTCTACGAGGGTATTGACTTCTACACCTCCATCACCCGTGCCCG 14368 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 || || || | || |||||| || | | || || | || || || || | Sbjct 14369 CTTCGAGGAGCTTTGCCAGGATCTGTTCCGCTCCACCATCCAGCCCGTCGACCGTGTCCT 14428 Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 | || || || || ||| ||| | | || | || | || || ||||| || Sbjct 14429 CACCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTACTGGTCGGAGGTTCCAC 14488 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268 ||||| || | || || | | || || | || || ||||| || || | Sbjct 14489 CCGTATCCCCCGCATCCAGAAGCTTATCTCCGACTACTTCAACGGCAAGGAGCCCAACAA 14548 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 || || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || Sbjct 14549 GTCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTGTC 14608 Query 350329 TGG 350331 ||| Sbjct 14609 TGG 14611 >seq713 Length=20651 Score = 113 bits (124), Expect = 1e-19 Identities = 104/131 (79%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| ||||| | ||||||||| || |||||||| || Sbjct 11917 CGAGGGACACCAAGCGTGACGTTC---TTAGAAGAAACACCAGCGAAATGGAAAGTGTTC 11861 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| |||||||||||||| |||||||| Sbjct 11860 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATAACGCCCACCATTTCA 11801 Query 377578 CCAGGATTGAC 377588 ||||| |||| Sbjct 11800 CCAGGGCTGAC 11790 Score = 95.1 bits (104), Expect = 4e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 378232 ATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATT 378291 || |||||||| | ||| || || ||||||||||| ||||| | | |||| |||| Sbjct 11122 ATGTAACCAGTCTCGGCAGTCTTGACAGCAGTATCAATCAAACCCTCTCTACCAGCCATG 11063 Query 378292 GCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCT 378351 ||||||||||| |||||| | || ||||| |||| || ||||| |||| | || || Sbjct 11062 GCATGGAAGAAGAATTCACTGGGCGTAAGACCACGAAGGTATGAATTCTCGACGAAGCCG 11003 Query 378352 CTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCA 378411 | || | || || | || | ||| || |||| || | || |||| || || || Sbjct 11002 CGAGCCTCAGGAGAGTAGTCGTCTTTGGTGAAATGCGGGAGAGTGCGATACTTGAAGCCG 10943 Query 378412 TATGGAATTCGTTTTCCATCAACATTCTGTTGACCAA 378448 | || || || || || || ||| |||| || |||| Sbjct 10942 AAGGGGATACGCTTACCCTCGACAATCTGCTGTCCAA 10906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515090252964365