Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 255 6e-63
seq1047 145 8e-30
>seq1012
Length=16087
Score = 255 bits (282), Expect = 6e-63
Identities = 533/782 (68%), Gaps = 34/782 (4%)
Strand=Plus/Plus
Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACA 53231
|||| |||||| | | ||||||| ||||| |||| ||| || || ||| | |
Sbjct 362 GAGAGACCTCAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAA 421
Query 53232 CGCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGC 53288
||||| || | || ||| || | ||| ||| |||| |||||| |||||| | |
Sbjct 422 CGCGTCATCG--AAACCTACAACCTGATGTCGAGC---AAGTTCTTTACTCACGCCTCTC 476
Query 53289 CAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGA 53348
| || || |||||||| || || ||| ||||| |||| |||||||| || | |
Sbjct 477 CTACGCTCTTCAACGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATA 536
Query 53349 TGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCA 53408
||||||| ||||| ||||| || |||||||| || |||||| || || |||||||
Sbjct 537 TGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGCGCTATGATCTCCA 596
Query 53409 AGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAAT 53466
| | | ||||| || ||| || | || || | || |||| || | |||| | ||
Sbjct 597 AAATGGCCGGTGGCATTGGTCTCAA-TG-TCCACCGCATCCGCGCTACCGGCTCTTACAT 654
Query 53467 CAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526
|| || ||||| | | | || |||| || |||||||| |||||||| |||||
Sbjct 655 TGCTGGCACCAACGGTACCTCTAACGGTGTCGTTCCCATGCTCCGTGTCTTCAATAACAC 714
Query 53527 GGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGA 53586
|| || |||||| |||| ||||| |||||| || | || || || ||||||||
Sbjct 715 TGCTCGCTACGTCGACCAAGGTGGCAACAAGCGCCCCGGTGCTTTTGCTATTTACCTCGA 774
Query 53587 GCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGA 53646
||| |||||||| ||| | | || || | || || || ||| || || | || ||
Sbjct 775 GCCTTGGCACGCTGACGTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGA 834
Query 53647 GATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706
| | ||| ||| ||||| || ||||| ||||| || || ||||||||| | | ||
Sbjct 835 GGTCCGCGCCCGCGACCTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGT 894
Query 53707 GGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTG 53765
||||||| ||| || ||| || |||||||| |||||||| || || | | | | ||
Sbjct 895 GGAGAAGAACGGAGACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTG 954
Query 53766 TCTACGGTGAGGAGTTTAACGAGA---TGTATCGGACGTAC--GCAGTT----CAGGGCC 53816
|||||| |||||||| ||||| |||| || |||| |||| | |||| |
Sbjct 955 -CTACGGGGAGGAGTT---CGAGACCCTGTACGAGAAGTACGAGCAGATGGGCAAGGGTC 1010
Query 53817 GCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGG 53876
|| |||| ||||||| | || | ||| |||| || ||| || ||| |
Sbjct 1011 GC------AAGACCATCAAGGCCCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCG 1064
Query 53877 AGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGA 53936
|||| || | || | |||| |||||||||| | | |||| ||||||||||||||||
Sbjct 1065 AGACCGGCAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGA 1124
Query 53937 AC 53938
||
Sbjct 1125 AC 1126
Score = 98.7 bits (108), Expect = 1e-15
Identities = 296/449 (66%), Gaps = 15/449 (3%)
Strand=Plus/Plus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||||| ||||| || ||||| ||||| || || || |||||||| ||||||||
Sbjct 1652 CGCAACTCTCTGCTTGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAAC 1711
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|| ||| |||||||| ||||| | || ||||| | |||||| ||| || || |||
Sbjct 1712 AATGAGTGCTTCGAGCCCTACACCTCGAATATCTATCAGCGCCGTGTCCTTGCTGGCGAG 1771
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
||| | ||||| ||| | |||||||| | || | |||| |||
Sbjct 1772 TTTCAGGTAGTCAACCCTTGGCTCTTGAAGGACCTCGTCGATATGGGCCTGTGGT--CCG 1829
Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGA 55715
| || |||| || || |||| |||||| || | ||||| | | |
Sbjct 1830 ATGCTATGAAGAACCGTATTATTGCCGAGAACGGT---TCTATTCAGAACATCCCCAACA 1886
Query 55716 TTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774
||||| | | | |||| | | ||| ||| || ||||| || | ||| | |
Sbjct 1887 TTCCTACCGAGG-TCAAAGCACTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACCGTC 1945
Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834
| | ||| ||| || |||||||| | |||||||||||| ||||| || |||||| |
Sbjct 1946 GTGCAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCGCTTAACATCCAC 2005
Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894
||| || | || | ||| |||| | | | |||||||| || |||||| ||
Sbjct 2006 ATGAAGGACCCAACTATGGGCAAGATCACCAGCATGCACTTCGCTGGTTGGAAGCTCGGT 2065
Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923
|| |||||||| |||||||| ||||| ||
Sbjct 2066 CTGAAGACGGGCATGTACTACCTGCGCAC 2094
>seq1047
Length=15418
Score = 145 bits (160), Expect = 8e-30
Identities = 226/321 (70%), Gaps = 4/321 (1%)
Strand=Plus/Minus
Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333
||| || ||| ||| |||| | || | ||| ||||||||||| ||| ||||| ||
Sbjct 7755 GAAGATCTTCCTGGCGAACGGAGACAGTCTCGTGTGAATGTAACGAGGGCTGGCAGCGTC 7696
Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393
| ||||| |||||||| | |||||| | |||| ||||||| | ||| | |||||
Sbjct 7695 CGAACCACCGGCAAGACGAGAACCGAAGTTTCCAGAGGGCTCCAGGCAGTTGACATTGTT 7636
Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453
|| |||||| ||||| ||||| | | || || || ||| | ||||| ||
Sbjct 7635 GGAGCCCACGAAGTTCTGAGCAAGACCAATGATGGTCTGCTGAAGGGAGACTTCACCGTG 7576
Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTC--ATGTCTGAC 117511
||| || | ||||||||| | | || || |||| | | | |||||| || ||||
Sbjct 7575 GTGGTAGGACGTCTGCTCAGAAATATAACCAGCCAATTCAACGACCTTCTGATCCTTGAC 7516
Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
||||||| |||||| |||||| || || ||||| ||||||| |||||||| |||||
Sbjct 7515 --CAGGTTCCTCTTGAAGCAGGCGTAGATGACCTTACGCTGACCGGGCTTCAGTCCATCG 7458
Query 117572 GCCACGTGAGGGATCGAACGC 117592
| ||| |||||| || |||
Sbjct 7457 ACGACGGAAGGGATGGATCGC 7437
Score = 136 bits (150), Expect = 4e-27
Identities = 202/285 (71%), Gaps = 6/285 (2%)
Strand=Plus/Minus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
||||| || | |||||| || ||| ||||| || || || | || || | |||||||
Sbjct 7718 ATGTAACGAGGGCTGGCAGCGTCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCAGAG 7659
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| ||| ||||| ||||||| ||||||||| |||||||| | | |||| ||
Sbjct 7658 GGCTCCAGGCAGTTGACATTGTTGGAGCCCACGAAGTTCTGAGCAAGAC---CAATGATG 7602
Query 152155 CCCTGCAGACTCG---CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCC 152211
|||| || | ||||||||||||| || | ||||||||| | || || || |||
Sbjct 7601 GTCTGCTGAAGGGAGACTTCACCGTGGTGGTAGGACGTCTGCTCAGAAATATAACCAGCC 7542
Query 152212 AACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTG 152271
|| | | |||||| ||| | ||||||| |||||| |||||||| || |||||
Sbjct 7541 AATTCAACGACCTTCTGATCCTTGACCAGGTTCCTCTTGAAGCAGGCGTAGATGACCTTA 7482
Query 152272 CGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316
||||| || |||| || || || ||| ||| || || |||
Sbjct 7481 CGCTGACCGGGCTTCAGTCCATCGACGACGGAAGGGATGGATCGC 7437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547158166109000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |