Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1012 255 6e-63 seq1047 145 8e-30 >seq1012 Length=16087 Score = 255 bits (282), Expect = 6e-63 Identities = 533/782 (68%), Gaps = 34/782 (4%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACA 53231 |||| |||||| | | ||||||| ||||| |||| ||| || || ||| | | Sbjct 362 GAGAGACCTCAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAA 421 Query 53232 CGCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGC 53288 ||||| || | || ||| || | ||| ||| |||| |||||| |||||| | | Sbjct 422 CGCGTCATCG--AAACCTACAACCTGATGTCGAGC---AAGTTCTTTACTCACGCCTCTC 476 Query 53289 CAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGA 53348 | || || |||||||| || || ||| ||||| |||| |||||||| || | | Sbjct 477 CTACGCTCTTCAACGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATA 536 Query 53349 TGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCA 53408 ||||||| ||||| ||||| || |||||||| || |||||| || || ||||||| Sbjct 537 TGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGCGCTATGATCTCCA 596 Query 53409 AGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAAT 53466 | | | ||||| || ||| || | || || | || |||| || | |||| | || Sbjct 597 AAATGGCCGGTGGCATTGGTCTCAA-TG-TCCACCGCATCCGCGCTACCGGCTCTTACAT 654 Query 53467 CAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526 || || ||||| | | | || |||| || |||||||| |||||||| ||||| Sbjct 655 TGCTGGCACCAACGGTACCTCTAACGGTGTCGTTCCCATGCTCCGTGTCTTCAATAACAC 714 Query 53527 GGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGA 53586 || || |||||| |||| ||||| |||||| || | || || || |||||||| Sbjct 715 TGCTCGCTACGTCGACCAAGGTGGCAACAAGCGCCCCGGTGCTTTTGCTATTTACCTCGA 774 Query 53587 GCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGA 53646 ||| |||||||| ||| | | || || | || || || ||| || || | || || Sbjct 775 GCCTTGGCACGCTGACGTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGA 834 Query 53647 GATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706 | | ||| ||| ||||| || ||||| ||||| || || ||||||||| | | || Sbjct 835 GGTCCGCGCCCGCGACCTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGT 894 Query 53707 GGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTG 53765 ||||||| ||| || ||| || |||||||| |||||||| || || | | | | || Sbjct 895 GGAGAAGAACGGAGACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTG 954 Query 53766 TCTACGGTGAGGAGTTTAACGAGA---TGTATCGGACGTAC--GCAGTT----CAGGGCC 53816 |||||| |||||||| ||||| |||| || |||| |||| | |||| | Sbjct 955 -CTACGGGGAGGAGTT---CGAGACCCTGTACGAGAAGTACGAGCAGATGGGCAAGGGTC 1010 Query 53817 GCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGG 53876 || |||| ||||||| | || | ||| |||| || ||| || ||| | Sbjct 1011 GC------AAGACCATCAAGGCCCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCG 1064 Query 53877 AGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGA 53936 |||| || | || | |||| |||||||||| | | |||| |||||||||||||||| Sbjct 1065 AGACCGGCAACCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGA 1124 Query 53937 AC 53938 || Sbjct 1125 AC 1126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 296/449 (66%), Gaps = 15/449 (3%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| || ||||| ||||| || || || |||||||| |||||||| Sbjct 1652 CGCAACTCTCTGCTTGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAAC 1711 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| |||||||| ||||| | || ||||| | |||||| ||| || || ||| Sbjct 1712 AATGAGTGCTTCGAGCCCTACACCTCGAATATCTATCAGCGCCGTGTCCTTGCTGGCGAG 1771 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 ||| | ||||| ||| | |||||||| | || | |||| ||| Sbjct 1772 TTTCAGGTAGTCAACCCTTGGCTCTTGAAGGACCTCGTCGATATGGGCCTGTGGT--CCG 1829 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGA 55715 | || |||| || || |||| |||||| || | ||||| | | | Sbjct 1830 ATGCTATGAAGAACCGTATTATTGCCGAGAACGGT---TCTATTCAGAACATCCCCAACA 1886 Query 55716 TTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 ||||| | | | |||| | | ||| ||| || ||||| || | ||| | | Sbjct 1887 TTCCTACCGAGG-TCAAAGCACTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACCGTC 1945 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 | | ||| ||| || |||||||| | |||||||||||| ||||| || |||||| | Sbjct 1946 GTGCAGATGGCTGCCGACCGTGGTGCCTTCATCGACCAGTCGCAGTCGCTTAACATCCAC 2005 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 ||| || | || | ||| |||| | | | |||||||| || |||||| || Sbjct 2006 ATGAAGGACCCAACTATGGGCAAGATCACCAGCATGCACTTCGCTGGTTGGAAGCTCGGT 2065 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923 || |||||||| |||||||| ||||| || Sbjct 2066 CTGAAGACGGGCATGTACTACCTGCGCAC 2094 >seq1047 Length=15418 Score = 145 bits (160), Expect = 8e-30 Identities = 226/321 (70%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333 ||| || ||| ||| |||| | || | ||| ||||||||||| ||| ||||| || Sbjct 7755 GAAGATCTTCCTGGCGAACGGAGACAGTCTCGTGTGAATGTAACGAGGGCTGGCAGCGTC 7696 Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393 | ||||| |||||||| | |||||| | |||| ||||||| | ||| | ||||| Sbjct 7695 CGAACCACCGGCAAGACGAGAACCGAAGTTTCCAGAGGGCTCCAGGCAGTTGACATTGTT 7636 Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453 || |||||| ||||| ||||| | | || || || ||| | ||||| || Sbjct 7635 GGAGCCCACGAAGTTCTGAGCAAGACCAATGATGGTCTGCTGAAGGGAGACTTCACCGTG 7576 Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTC--ATGTCTGAC 117511 ||| || | ||||||||| | | || || |||| | | | |||||| || |||| Sbjct 7575 GTGGTAGGACGTCTGCTCAGAAATATAACCAGCCAATTCAACGACCTTCTGATCCTTGAC 7516 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 ||||||| |||||| |||||| || || ||||| ||||||| |||||||| ||||| Sbjct 7515 --CAGGTTCCTCTTGAAGCAGGCGTAGATGACCTTACGCTGACCGGGCTTCAGTCCATCG 7458 Query 117572 GCCACGTGAGGGATCGAACGC 117592 | ||| |||||| || ||| Sbjct 7457 ACGACGGAAGGGATGGATCGC 7437 Score = 136 bits (150), Expect = 4e-27 Identities = 202/285 (71%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | |||||| || ||| ||||| || || || | || || | ||||||| Sbjct 7718 ATGTAACGAGGGCTGGCAGCGTCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCAGAG 7659 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| ||| ||||| ||||||| ||||||||| |||||||| | | |||| || Sbjct 7658 GGCTCCAGGCAGTTGACATTGTTGGAGCCCACGAAGTTCTGAGCAAGAC---CAATGATG 7602 Query 152155 CCCTGCAGACTCG---CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCC 152211 |||| || | ||||||||||||| || | ||||||||| | || || || ||| Sbjct 7601 GTCTGCTGAAGGGAGACTTCACCGTGGTGGTAGGACGTCTGCTCAGAAATATAACCAGCC 7542 Query 152212 AACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTG 152271 || | | |||||| ||| | ||||||| |||||| |||||||| || ||||| Sbjct 7541 AATTCAACGACCTTCTGATCCTTGACCAGGTTCCTCTTGAAGCAGGCGTAGATGACCTTA 7482 Query 152272 CGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 ||||| || |||| || || || ||| ||| || || ||| Sbjct 7481 CGCTGACCGGGCTTCAGTCCATCGACGACGGAAGGGATGGATCGC 7437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547158166109000