Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 313 3e-80
seq460 167 3e-36
seq1955 154 2e-32
seq395 120 3e-22
seq1047 116 4e-21
>seq1012
Length=16087
Score = 313 bits (346), Expect = 3e-80
Identities = 979/1490 (66%), Gaps = 61/1490 (4%)
Strand=Plus/Minus
Query 80355 AAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414
|||||| || || ||| || ||| |||| | || | ||||| ||||| || |||
Sbjct 1774 AAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAGCACTC 1715
Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474
||||| || | |||||||| ||||| || |||||||| || |||| | ||| || ||
Sbjct 1714 ATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAGAGTT 1655
Query 80475 CCGCAGGCCGTGCTTCTTGATATCCTC-----GCGCAAATCTGACCAAAAATCAACCCCA 80529
|| | ||||||| |||||| | ||| | ||| | | || | | | || |
Sbjct 1654 GCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAGAG---ATCCGA 1598
Query 80530 ACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587
||| | || ||||||||||| ||| | |||||||| || | || || ||| ||
Sbjct 1597 GGGCT-TAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGT 1539
Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGTGA 80646
|||||||||| || |||||| | |||||| || ||| |||| ||||||| |||||
Sbjct 1538 ACGTCTCGTAGGGACCCTCCTCCCTGGCCAACTGCAC-CGACATGGTAAGGGCAGCGTGG 1480
Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAG 80706
|| || ||| || | |||||| | | || || | ||| || || | || |
Sbjct 1479 TAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGCATG 1420
Query 80707 CCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC 80766
| | || ||| | || || || |||||||| |||| | || ||||||||||||
Sbjct 1419 CGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGC 1360
Query 80767 TTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAG 80825
|||| | | || |||||| | | ||||| ||| ||||| | | ||| ||
Sbjct 1359 ATGTT-GCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTTGAG 1301
Query 80826 GTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTT 80879
||| || ||| ||| | || || || || || ||||| |||||| | | |||
Sbjct 1300 GTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACACCCTCGTT 1241
Query 80880 CCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGC 80939
| || || | || ||| || || ||||| || || || || ||||| ||||
Sbjct 1240 GTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATCAGG 1181
Query 80940 ATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTT 80999
| | |||| ||| || ||||| | || || || ||||||||||| ||
Sbjct 1180 CGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAGGTTCTT 1121
Query 81000 CTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGAC 81059
|||||| |||| |||| ||| ||||||||| |||| | ||| | |||||||||
Sbjct 1120 CTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGT 1061
Query 81060 CTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTG-C 81118
||| | || ||| ||||| | ||| | || | ||||||| |||||| ||| |
Sbjct 1060 CTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGCGACCCTTGCC 1001
Query 81119 CTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAG 81176
| || | | | ||||| |||| || || ||||||| | |||| | || || | ||
Sbjct 1000 CATCTG-CTCGTACTTCTCGTACAGGGTC-TCGAACTCCTCCCCGTAGCAG-TCGGCAAG 944
Query 81177 GTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCAT 81236
| || |||||||| |||||||| || |||||| || ||||| || ||||||
Sbjct 943 ACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCAT 884
Query 81237 GAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACC 81296
||| || |||||||| || ||| ||| ||||||||| ||| ||||||| | ||
Sbjct 883 GAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCC 824
Query 81297 CTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACAC 81356
||||| ||| | || | ||||| | || ||| || ||||| ||||| || || |
Sbjct 823 ATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAAT 764
Query 81357 GGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAA 81413
|| | | || ||| |||||| |||| |||||| || ||||| || ||
Sbjct 763 AGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAA 704
Query 81414 TACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCC 81473
||||| | ||| || | || ||| | || |||||| || || | || || ||
Sbjct 703 GACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 644
Query 81474 CTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTT-GAAATCTG 81530
| ||||| | | || |||| ||||| |||||||| | ||| ||| || |||
Sbjct 643 GGTAGCGCGGATGCGGTGGACATTG--AGACCAATGCCACC-GGCCATTTTGGAGATCAT 587
Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCAT---GTCAAG 81587
||| || || | ||| || || || |||||||| || | ||||| | ||||
Sbjct 586 AGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAG 527
Query 81588 CAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGC 81647
||| || || |||| ||||| | |||||| ||||| || || || | ||
Sbjct 526 GAAGCAAGAG---GACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGC 470
Query 81648 GTGAATGAAATAAC-GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGT 81706
|||| | ||| ||| | | |||||||||| |||||||| |||||||| || || |
Sbjct 469 GTGAGT-AAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCAT 411
Query 81707 CACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG-----CCTGC 81761
| || || || | ||| |||||||| | ||||| ||| || ||||| | |||
Sbjct 410 CGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGC 351
Query 81762 GTTC----------AGGTAC-ATCTTCTGCAAAGTCTTGATGCCGAAGTA 81800
|| |||||| ||| ||| ||| ||||||| |||||||||
Sbjct 350 CGTCAAGCTTCAGGAGGTACGATC-TCTCCAAGGTCTTGAAGCCGAAGTA 302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| |||| ||||| ||||||||||||||||| || || |||||| || | ||||
Sbjct 2100 GCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAACCAGCGAAGTGC 2041
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| | | || |||| || |||| |||||| || ||||| |||||
Sbjct 2040 ATGCTGGTGATCTTGCCCATAGTTGGGTCCTTCATGTGGATGTTAAGCGACTGCGACTGG 1981
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180
|||||| || ||||| || || |||||
Sbjct 1980 TCGATGAAGGCACCACGGTCGGCAGCCAT 1952
>seq460
Length=27106
Score = 167 bits (184), Expect = 3e-36
Identities = 177/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | ||||||||||| ||||| || ||||||||||||
Sbjct 24619 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAGTCATCG 24678
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | || | || ||||| || |||||||| || ||||| ||||||
Sbjct 24679 GACACAATCGACAACGTTAAATCCAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCAG 24738
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| ||||||||||| ||||| || ||||| | ||| ||||| ||| || || ||
Sbjct 24739 CAGCGTCTCATTTTTGCTGGAAAGCAGCTGGAGGACGGTCGCACCCTGAGC-GATTACAA 24797
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || ||||| || || ||||| || ||| | ||||| || || || ||
Sbjct 24798 CATTCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCA 24848
Score = 147 bits (162), Expect = 2e-30
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||| ||||| ||||| ||||| ||| | || ||||| |
Sbjct 24187 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGTCG 24246
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || || ||||||||||| || || ||||| |||
Sbjct 24247 AAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAGCGTCTTATCTTCGCTGGCAAG 24306
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | || ||||| | ||||| || |||| ||||| ||||| |||||
Sbjct 24307 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 24366
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | ||||| || |||||
Sbjct 24367 TTGGTNCTTCGTCTCCGTGGTGG 24389
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | ||||| ||||| || || || ||||| || |||
Sbjct 24391 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCC 24450
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | || | || || |||||||||||||| |||||||| || |||
Sbjct 24451 GACACCATTGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 24510
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| || || ||||| || || |||| ||| || | | ||||| ||
Sbjct 24511 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAAC 24570
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || ||||| || || || | ||||| || |||||
Sbjct 24571 ATTCAGAAGGAGTCGACTCTCCACCTTGTGCTTCGTCTCCGTGGTGG 24617
>seq1955
Length=8910
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| || ||||| || || ||||||||||| || || ||||| |||||
Sbjct 3561 ATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCG 3620
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 3621 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 3680
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 3681 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 3740
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || || |||| || || |||||
Sbjct 3741 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGG 3790
>seq395
Length=29552
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 1006 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 1065
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| |
Sbjct 1066 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 1125
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || || || ||||| |||||||||| |||||||| | ||||| || |||| |||
Sbjct 1126 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATCCAGAAG 1185
Query 27595 G 27595
|
Sbjct 1186 G 1186
>seq1047
Length=15418
Score = 116 bits (128), Expect = 4e-21
Identities = 202/291 (69%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013
|||| | ||| ||||| || ||| | || || || ||||| ||||| |||||
Sbjct 7429 GATAATATGCGATCCATCCCTTCCGTCGTCGATGGACTGAAGCCCGGTCAGCGTAAGGTC 7488
Query 32014 ATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGGG 32072
|| ||||||||| |||||| ||||||| || || || |||||| | | || | ||
Sbjct 7489 ATCTACGCCTGCTTCAAGAGGAACCTGGTCAAGGATCA-GAAGGTCGTTGAATTGGCTGG 7547
Query 32073 CTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGT 32132
|| | | ||||| ||| |||| |||||||| || | || || ||| ||||| |
Sbjct 7548 TTATATTTCTGAGCAGACGTCCTACCACCACGGTGAAGTCTCCCTTCAGCAGACCATCAT 7607
Query 32133 CAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACA 32192
|||||||||||||| || || | || || | |||| || ||||| |||||| |
Sbjct 7608 TGGTCTTGCTCAGAACTTCGTGGGCTCCAACAATGTCAACTGCCTGGAGCCCTCTGGAAA 7667
Query 32193 GTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243
|| || | || || |||||||| ||| ||||| ||| | ||||||||
Sbjct 7668 CTTCGGTTCTCGTCTTGCCGGTGGTTCGGACGCTGCCAGCCCTCGTTACAT 7718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570250125319600
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