Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1012 313 3e-80 seq460 167 3e-36 seq1955 154 2e-32 seq395 120 3e-22 seq1047 116 4e-21 >seq1012 Length=16087 Score = 313 bits (346), Expect = 3e-80 Identities = 979/1490 (66%), Gaps = 61/1490 (4%) Strand=Plus/Minus Query 80355 AAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414 |||||| || || ||| || ||| |||| | || | ||||| ||||| || ||| Sbjct 1774 AAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAGCACTC 1715 Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474 ||||| || | |||||||| ||||| || |||||||| || |||| | ||| || || Sbjct 1714 ATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAGAGTT 1655 Query 80475 CCGCAGGCCGTGCTTCTTGATATCCTC-----GCGCAAATCTGACCAAAAATCAACCCCA 80529 || | ||||||| |||||| | ||| | ||| | | || | | | || | Sbjct 1654 GCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAGAG---ATCCGA 1598 Query 80530 ACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587 ||| | || ||||||||||| ||| | |||||||| || | || || ||| || Sbjct 1597 GGGCT-TAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGT 1539 Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGTGA 80646 |||||||||| || |||||| | |||||| || ||| |||| ||||||| ||||| Sbjct 1538 ACGTCTCGTAGGGACCCTCCTCCCTGGCCAACTGCAC-CGACATGGTAAGGGCAGCGTGG 1480 Query 80647 TAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAG 80706 || || ||| || | |||||| | | || || | ||| || || | || | Sbjct 1479 TAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGCATG 1420 Query 80707 CCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC 80766 | | || ||| | || || || |||||||| |||| | || |||||||||||| Sbjct 1419 CGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGC 1360 Query 80767 TTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAG 80825 |||| | | || |||||| | | ||||| ||| ||||| | | ||| || Sbjct 1359 ATGTT-GCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTTGAG 1301 Query 80826 GTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTT 80879 ||| || ||| ||| | || || || || || ||||| |||||| | | ||| Sbjct 1300 GTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACACCCTCGTT 1241 Query 80880 CCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGC 80939 | || || | || ||| || || ||||| || || || || ||||| |||| Sbjct 1240 GTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATCAGG 1181 Query 80940 ATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTT 80999 | | |||| ||| || ||||| | || || || ||||||||||| || Sbjct 1180 CGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAGGTTCTT 1121 Query 81000 CTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGAC 81059 |||||| |||| |||| ||| ||||||||| |||| | ||| | ||||||||| Sbjct 1120 CTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGT 1061 Query 81060 CTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTG-C 81118 ||| | || ||| ||||| | ||| | || | ||||||| |||||| ||| | Sbjct 1060 CTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGCGACCCTTGCC 1001 Query 81119 CTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAG 81176 | || | | | ||||| |||| || || ||||||| | |||| | || || | || Sbjct 1000 CATCTG-CTCGTACTTCTCGTACAGGGTC-TCGAACTCCTCCCCGTAGCAG-TCGGCAAG 944 Query 81177 GTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCAT 81236 | || |||||||| |||||||| || |||||| || ||||| || |||||| Sbjct 943 ACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCAT 884 Query 81237 GAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACC 81296 ||| || |||||||| || ||| ||| ||||||||| ||| ||||||| | || Sbjct 883 GAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCC 824 Query 81297 CTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACAC 81356 ||||| ||| | || | ||||| | || ||| || ||||| ||||| || || | Sbjct 823 ATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAAT 764 Query 81357 GGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAA 81413 || | | || ||| |||||| |||| |||||| || ||||| || || Sbjct 763 AGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAA 704 Query 81414 TACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCC 81473 ||||| | ||| || | || ||| | || |||||| || || | || || || Sbjct 703 GACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 644 Query 81474 CTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTT-GAAATCTG 81530 | ||||| | | || |||| ||||| |||||||| | ||| ||| || ||| Sbjct 643 GGTAGCGCGGATGCGGTGGACATTG--AGACCAATGCCACC-GGCCATTTTGGAGATCAT 587 Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCAT---GTCAAG 81587 ||| || || | ||| || || || |||||||| || | ||||| | |||| Sbjct 586 AGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAG 527 Query 81588 CAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGC 81647 ||| || || |||| ||||| | |||||| ||||| || || || | || Sbjct 526 GAAGCAAGAG---GACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGC 470 Query 81648 GTGAATGAAATAAC-GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGT 81706 |||| | ||| ||| | | |||||||||| |||||||| |||||||| || || | Sbjct 469 GTGAGT-AAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCAT 411 Query 81707 CACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG-----CCTGC 81761 | || || || | ||| |||||||| | ||||| ||| || ||||| | ||| Sbjct 410 CGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGC 351 Query 81762 GTTC----------AGGTAC-ATCTTCTGCAAAGTCTTGATGCCGAAGTA 81800 || |||||| ||| ||| ||| ||||||| ||||||||| Sbjct 350 CGTCAAGCTTCAGGAGGTACGATC-TCTCCAAGGTCTTGAAGCCGAAGTA 302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||| ||||| ||||||||||||||||| || || |||||| || | |||| Sbjct 2100 GCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAACCAGCGAAGTGC 2041 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | || |||| || |||| |||||| || ||||| ||||| Sbjct 2040 ATGCTGGTGATCTTGCCCATAGTTGGGTCCTTCATGTGGATGTTAAGCGACTGCGACTGG 1981 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 |||||| || ||||| || || ||||| Sbjct 1980 TCGATGAAGGCACCACGGTCGGCAGCCAT 1952 >seq460 Length=27106 Score = 167 bits (184), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||| ||||| || |||||||||||| Sbjct 24619 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAGTCATCG 24678 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | || | || ||||| || |||||||| || ||||| |||||| Sbjct 24679 GACACAATCGACAACGTTAAATCCAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCAG 24738 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| ||||||||||| ||||| || ||||| | ||| ||||| ||| || || || Sbjct 24739 CAGCGTCTCATTTTTGCTGGAAAGCAGCTGGAGGACGGTCGCACCCTGAGC-GATTACAA 24797 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || ||||| || ||| | ||||| || || || || Sbjct 24798 CATTCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCA 24848 Score = 147 bits (162), Expect = 2e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| ||||| ||| | || ||||| | Sbjct 24187 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGTCG 24246 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || || ||||||||||| || || ||||| ||| Sbjct 24247 AAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAGCGTCTTATCTTCGCTGGCAAG 24306 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| | ||||| || |||| ||||| ||||| ||||| Sbjct 24307 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAC 24366 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| || ||||| Sbjct 24367 TTGGTNCTTCGTCTCCGTGGTGG 24389 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||| ||||| || || || ||||| || ||| Sbjct 24391 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCC 24450 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || | || || |||||||||||||| |||||||| || ||| Sbjct 24451 GACACCATTGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 24510 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| || || |||| ||| || | | ||||| || Sbjct 24511 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAAC 24570 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || || || | ||||| || ||||| Sbjct 24571 ATTCAGAAGGAGTCGACTCTCCACCTTGTGCTTCGTCTCCGTGGTGG 24617 >seq1955 Length=8910 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || ||||||||||| || || ||||| ||||| Sbjct 3561 ATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCG 3620 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 3621 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 3680 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 3681 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTAC 3740 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || || |||| || || ||||| Sbjct 3741 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGG 3790 >seq395 Length=29552 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 1006 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 1065 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| | Sbjct 1066 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 1125 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||||| |||||||| | ||||| || |||| ||| Sbjct 1126 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATCCAGAAG 1185 Query 27595 G 27595 | Sbjct 1186 G 1186 >seq1047 Length=15418 Score = 116 bits (128), Expect = 4e-21 Identities = 202/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | ||| ||||| || ||| | || || || ||||| ||||| ||||| Sbjct 7429 GATAATATGCGATCCATCCCTTCCGTCGTCGATGGACTGAAGCCCGGTCAGCGTAAGGTC 7488 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGGG 32072 || ||||||||| |||||| ||||||| || || || |||||| | | || | || Sbjct 7489 ATCTACGCCTGCTTCAAGAGGAACCTGGTCAAGGATCA-GAAGGTCGTTGAATTGGCTGG 7547 Query 32073 CTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGT 32132 || | | ||||| ||| |||| |||||||| || | || || ||| ||||| | Sbjct 7548 TTATATTTCTGAGCAGACGTCCTACCACCACGGTGAAGTCTCCCTTCAGCAGACCATCAT 7607 Query 32133 CAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACA 32192 |||||||||||||| || || | || || | |||| || ||||| |||||| | Sbjct 7608 TGGTCTTGCTCAGAACTTCGTGGGCTCCAACAATGTCAACTGCCTGGAGCCCTCTGGAAA 7667 Query 32193 GTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 || || | || || |||||||| ||| ||||| ||| | |||||||| Sbjct 7668 CTTCGGTTCTCGTCTTGCCGGTGGTTCGGACGCTGCCAGCCCTCGTTACAT 7718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570250125319600