Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq460 91.5 9e-14 >seq460 Length=27106 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||||| |||||| |||||||| || || || | || || Sbjct 24608 AGACGAAGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGA 24549 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || |||||||| || || || || | |||||| Sbjct 24548 CCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCC 24489 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||| ||| | ||| ||||| || || || | || Sbjct 24488 TTGTCCTGGATC-TTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGTGT 24430 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || ||||| |||||||| Sbjct 24429 GATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314697168590015