Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq162 102 7e-17 >seq162 Length=42721 Score = 102 bits (112), Expect = 7e-17 Identities = 213/306 (70%), Gaps = 16/306 (5%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCC 34380 ||| || ||||| ||||||| | |||| || || || || || |||| ||| || | Sbjct 17842 GGGCGTCAAGATTTGGGACGGTAACGGCTCGCGTGAGTTCCTTGACA-GCGTCGG----C 17896 Query 34381 ATCTCGG---GAGGAG--GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTT 34435 ||||| ||| || ||||| | ||||| ||||| |||||||| ||| |||||||| Sbjct 17897 CTCTCGCACCGAGAAGTCGGCGATCTCGGCCCTGTCTATGGGTTCCAATGGCGACACTTT 17956 Query 34436 GGGGCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GC 34493 || || ||||| || | || ||| ||||||| |||| ||||| | ||||| || || Sbjct 17957 GGCGCCGAGTA-CGTCGACGCCAAGACGGACTACACGGGTCAGGGCGTCGACCAACTTGC 18015 Query 34494 AGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGT 34553 | | || ||| ||| | ||| ||||| | ||| | | ||| | | |||||| Sbjct 18016 CG-AGGTTATCCACAAACTCAAGACAAACCCGTACGACCGCCGCATCCTCCTCAGCGCGT 18074 Query 34554 GGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTC 34612 ||||||| |||||| |||||| || || || ||||||| | ||| || ||| Sbjct 18075 GGAACCCCGCGGATCTAAAGAAGATGGCCCTGCCACCATGCCACA-TGTTTGCGCAGTTC 18133 Query 34613 TACGTC 34618 |||||| Sbjct 18134 TACGTC 18139 Score = 102 bits (112), Expect = 7e-17 Identities = 213/306 (70%), Gaps = 16/306 (5%) Strand=Plus/Minus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| | ||||||| || || || |||||| |||||| | Sbjct 18139 GACGTAGAACTGCGCAAACA-TGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCGG 18081 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||||| | | ||| | | ||| | ||||| ||| | ||| ||| | Sbjct 18080 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGGTTTGTCTTGAGTTTGTGGATAA 18021 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 | | | || || ||||| | ||||| |||| ||||||| ||| || | || ||||| Sbjct 18020 CCT-CGGCAAGTTGGTCGACGCCCTGACCCGTGTAGTCCGTCTTGGCGTCGACG-TACTC 17963 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC--CTCCTC---C 6958 || |||||||||| ||| |||||||| ||||| ||||| | ||||| || ||| Sbjct 17962 GGCGCCAAAGTGTCGCCATTGGAACCCATAGACAGGGCCGAGATCGCCGACTTCTCGGTG 17903 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 ||||| | || ||| |||| || || || || || |||| | ||||||| ||||| Sbjct 17902 CGAGAGG----CCGACGC-TGTCAAGGAACTCACGCGAGCCGTTACCGTCCCAAATCTTG 17848 Query 7019 ACCCCC 7024 || ||| Sbjct 17847 ACGCCC 17842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448215024267600