Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq162 102 7e-17
>seq162
Length=42721
Score = 102 bits (112), Expect = 7e-17
Identities = 213/306 (70%), Gaps = 16/306 (5%)
Strand=Plus/Plus
Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCC 34380
||| || ||||| ||||||| | |||| || || || || || |||| ||| || |
Sbjct 17842 GGGCGTCAAGATTTGGGACGGTAACGGCTCGCGTGAGTTCCTTGACA-GCGTCGG----C 17896
Query 34381 ATCTCGG---GAGGAG--GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTT 34435
||||| ||| || ||||| | ||||| ||||| |||||||| ||| ||||||||
Sbjct 17897 CTCTCGCACCGAGAAGTCGGCGATCTCGGCCCTGTCTATGGGTTCCAATGGCGACACTTT 17956
Query 34436 GGGGCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GC 34493
|| || ||||| || | || ||| ||||||| |||| ||||| | ||||| || ||
Sbjct 17957 GGCGCCGAGTA-CGTCGACGCCAAGACGGACTACACGGGTCAGGGCGTCGACCAACTTGC 18015
Query 34494 AGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGT 34553
| | || ||| ||| | ||| ||||| | ||| | | ||| | | ||||||
Sbjct 18016 CG-AGGTTATCCACAAACTCAAGACAAACCCGTACGACCGCCGCATCCTCCTCAGCGCGT 18074
Query 34554 GGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTC 34612
||||||| |||||| |||||| || || || ||||||| | ||| || |||
Sbjct 18075 GGAACCCCGCGGATCTAAAGAAGATGGCCCTGCCACCATGCCACA-TGTTTGCGCAGTTC 18133
Query 34613 TACGTC 34618
||||||
Sbjct 18134 TACGTC 18139
Score = 102 bits (112), Expect = 7e-17
Identities = 213/306 (70%), Gaps = 16/306 (5%)
Strand=Plus/Minus
Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
||||||||| || ||| | ||||||| || || || |||||| |||||| |
Sbjct 18139 GACGTAGAACTGCGCAAACA-TGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCGG 18081
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
|||||||||||| | | ||| | | ||| | ||||| ||| | ||| ||| |
Sbjct 18080 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTACGGGTTTGTCTTGAGTTTGTGGATAA 18021
Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903
| | | || || ||||| | ||||| |||| ||||||| ||| || | || |||||
Sbjct 18020 CCT-CGGCAAGTTGGTCGACGCCCTGACCCGTGTAGTCCGTCTTGGCGTCGACG-TACTC 17963
Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC--CTCCTC---C 6958
|| |||||||||| ||| |||||||| ||||| ||||| | ||||| || |||
Sbjct 17962 GGCGCCAAAGTGTCGCCATTGGAACCCATAGACAGGGCCGAGATCGCCGACTTCTCGGTG 17903
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
||||| | || ||| |||| || || || || || |||| | ||||||| |||||
Sbjct 17902 CGAGAGG----CCGACGC-TGTCAAGGAACTCACGCGAGCCGTTACCGTCCCAAATCTTG 17848
Query 7019 ACCCCC 7024
|| |||
Sbjct 17847 ACGCCC 17842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448215024267600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |