Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1955 143 6e-29 seq460 131 4e-25 seq198 129 1e-24 seq1012 116 9e-21 >seq1955 Length=8910 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| |||| || || Sbjct 3785 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3726 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || |||||||| || || || Sbjct 3725 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 3666 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 3665 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAG 3606 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | || || | ||| | ||||| Sbjct 3605 GGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 3564 >seq460 Length=27106 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| || || || || | ||||| |||| |||||| | |||||| Sbjct 24602 AGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCT 24543 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || | || || || ||||| ||||| || |||||||| Sbjct 24542 TCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCC 24483 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || || |||||||| || | ||| || || | ||||| ||| Sbjct 24482 TGGATCTTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTC 24423 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || ||||| || || Sbjct 24422 TTTCCGGTCAAGGTCTT 24406 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || || |||| ||||| |||| | || | || || Sbjct 24374 AGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 24315 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||||||||| || || || ||||| || ||||| |||||||| Sbjct 24314 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCC 24255 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||||| || |||| || || || | ||||| ||| Sbjct 24254 TGGATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTC 24195 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 24194 TTGCCGGT 24187 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || || | ||||||||| || || | || || Sbjct 24830 AGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCC 24771 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || || || || ||||| || || ||||| ||||| ||| Sbjct 24770 TCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 24711 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||||| ||||| || | || || || | ||| |||||| Sbjct 24710 TGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTC 24651 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | |||||| Sbjct 24650 TTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 >seq198 Length=39678 Score = 129 bits (142), Expect = 1e-24 Identities = 201/282 (71%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || ||||||||||| |||| | ||||| || ||||| |||||| || ||| | | Sbjct 27069 ACTTTATATTTAATTTTTGCTTTATTTTCAGG-ATTATTAGGTACAGCTTTCTCTGTATT 27127 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGTAATAGCCAACTT 7557 ||||| ||||| ||| || || || |||| ||||| || ||| |||| | Sbjct 27128 AATAAGATTAGAGTTAAGTGGACCAGGAGTTCAATATATTTCAG-----ATAACCAATTA 27182 Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || || ||| ||||| || ||||| || ||||||| |||||| | |||||||| | Sbjct 27183 TATAATAGTATAATTACAGCTCATGCTATTCTTATGATATTCTTTATGGTTATGCCAGCC 27242 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | || || ||||| || || | || | ||||||||| | |||| || |||||||| Sbjct 27243 TTAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCGGATATGGCC 27302 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 |||||||| | || || |||||||||||| || |||| ||| Sbjct 27303 TTTCCAAGATTAAATAACATAAGTTTTTGACTATTACCACCT 27344 >seq1012 Length=16087 Score = 116 bits (128), Expect = 9e-21 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || | || || ||||||| |||||||| |||| ||| Sbjct 1122 TTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCG 1063 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | ||||| |||||||| || ||| || | ||| || || | ||| | | |||| Sbjct 1062 GTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGCGACCCTTG 1003 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || | ||||||||| |||||||| ||| || || | |||||| ||| | ||| Sbjct 1002 CCCATCTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGGCAAGA 943 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || ||| || || ||||| | |||| |||| ||||| | | ||||| ||||||||| Sbjct 942 CCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATG 883 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||||| || | |||||| ||| |||||| Sbjct 882 AAGAGATCGGGGATCCAAAGAGCGAGGAAAAG 851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192402013467770