Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1955 143 6e-29
seq460 131 4e-25
seq198 129 1e-24
seq1012 116 9e-21
>seq1955
Length=8910
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || |||||||| ||||| || || |||| ||||| |||| || ||
Sbjct 3785 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3726
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| || || || |||||||| || || ||
Sbjct 3725 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 3666
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 3665 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAG 3606
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||||||||| | || || | ||| | |||||
Sbjct 3605 GGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 3564
>seq460
Length=27106
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| |||||||||||||| || || || || | ||||| |||| |||||| | ||||||
Sbjct 24602 AGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCT 24543
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||| || | || || || ||||| ||||| || ||||||||
Sbjct 24542 TCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCC 24483
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| || || || |||||||| || | ||| || || | ||||| |||
Sbjct 24482 TGGATCTTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTC 24423
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || ||||| || ||
Sbjct 24422 TTTCCGGTCAAGGTCTT 24406
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || ||||| || || |||| ||||| |||| | || | || ||
Sbjct 24374 AGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 24315
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||||||||| || || || ||||| || ||||| ||||||||
Sbjct 24314 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCC 24255
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| |||||||| || |||| || || || | ||||| |||
Sbjct 24254 TGGATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTC 24195
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 24194 TTGCCGGT 24187
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| || || || || || || | ||||||||| || || | || ||
Sbjct 24830 AGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCC 24771
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| || || || || || ||||| || || ||||| ||||| |||
Sbjct 24770 TCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 24711
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| || || ||||| ||||| || | || || || | ||| ||||||
Sbjct 24710 TGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTC 24651
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | ||| | ||||||
Sbjct 24650 TTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619
>seq198
Length=39678
Score = 129 bits (142), Expect = 1e-24
Identities = 201/282 (71%), Gaps = 9/282 (3%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499
|| ||||||||||| |||| | ||||| || ||||| |||||| || ||| | |
Sbjct 27069 ACTTTATATTTAATTTTTGCTTTATTTTCAGG-ATTATTAGGTACAGCTTTCTCTGTATT 27127
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGTAATAGCCAACTT 7557
||||| ||||| ||| || || || |||| ||||| || ||| |||| |
Sbjct 27128 AATAAGATTAGAGTTAAGTGGACCAGGAGTTCAATATATTTCAG-----ATAACCAATTA 27182
Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617
|| || ||| ||||| || ||||| || ||||||| |||||| | |||||||| |
Sbjct 27183 TATAATAGTATAATTACAGCTCATGCTATTCTTATGATATTCTTTATGGTTATGCCAGCC 27242
Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677
| || || ||||| || || | || | ||||||||| | |||| || ||||||||
Sbjct 27243 TTAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCGGATATGGCC 27302
Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
|||||||| | || || |||||||||||| || |||| |||
Sbjct 27303 TTTCCAAGATTAAATAACATAAGTTTTTGACTATTACCACCT 27344
>seq1012
Length=16087
Score = 116 bits (128), Expect = 9e-21
Identities = 189/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | || || ||||||| |||||||| |||| |||
Sbjct 1122 TTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCG 1063
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| ||||| |||||||| || ||| || | ||| || || | ||| | | ||||
Sbjct 1062 GTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGCGACCCTTG 1003
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| | ||||||||| |||||||| ||| || || | |||||| ||| | |||
Sbjct 1002 CCCATCTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGGCAAGA 943
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| ||| || || ||||| | |||| |||| ||||| | | ||||| |||||||||
Sbjct 942 CCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATG 883
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
||||| || | |||||| ||| ||||||
Sbjct 882 AAGAGATCGGGGATCCAAAGAGCGAGGAAAAG 851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192402013467770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |