Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1012 123 3e-23 >seq1012 Length=16087 Score = 123 bits (136), Expect = 3e-23 Identities = 381/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 ||||| || || || |||||||| | | |||||| || | | || |||| ||||| Sbjct 942 CCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATG 883 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || ||||| ||||| | || || || |||| | || || || || Sbjct 882 AAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCA 823 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| |||||| | || || | | |||| ||||| || || || || || Sbjct 822 TGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATA 763 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | || || || || || || || || || | || | || |||||||| | Sbjct 762 GCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAG 703 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| |||| | ||||||||| || || || || |||| ||| ||| || Sbjct 702 ACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 643 Query 78255 CTTGCGCGAATAT--TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 | ||||| || | || || | || || || || ||||| || || || | || Sbjct 642 GTAGCGCGGATGCGGTGGACATTGAGA--CCAATGCCACCGGCCATTTTGGAGATCATAG 585 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 |||| || | || |||||||||||||| ||| ||| ||| |||| | | ||| | Sbjct 584 CGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGA 525 Query 78373 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCG 78432 | || |||| ||| ||| || || || || || | || ||||| || || | Sbjct 524 AGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAG 465 Query 78433 TAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC----CCAT 78488 |||| | || || | || ||||| ||||| || | ||| | ||| || Sbjct 464 TAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCC 405 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 |||| || || || |||||||| | ||| ||||||||||| || Sbjct 404 AGATG----CCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTC 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694595382191200