Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1012 136 6e-27 >seq1012 Length=16087 Score = 136 bits (150), Expect = 6e-27 Identities = 418/646 (65%), Gaps = 8/646 (1%) Strand=Plus/Minus Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCAT 76608 ||||||||| || || || ||||| | | ||| || || | | || || | ||||| Sbjct 943 ACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCAT 884 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 |||||||| || ||||| ||||| | || || || |||| | || || || || Sbjct 883 GAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCC 824 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 ||||| |||||| | ||| || | | |||| ||||| || || || || || Sbjct 823 ATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAAT 764 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || | | |||| || || || || || || || || | || | ||||||||||| | Sbjct 763 AGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAA 704 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 || | | ||| |||| | |||||||| ||||| || || |||| ||| ||| || Sbjct 703 GACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 644 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 || || || | | || || || || || |||||||| ||||| | ||| Sbjct 643 GGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGC 584 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 ||| || | ||||| ||||| ||||| ||| || ||| |||| | | ||| || Sbjct 583 GCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAA 524 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 || |||| ||| ||| || || || || || | |||||||| || ||||| Sbjct 523 GCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGT 464 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC----CCATT 77084 || | || || | || ||||| ||||| || || ||| | || || Sbjct 463 AAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCA 404 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 |||| || |||||||||||||| | ||| |||||||||| || || |||| | Sbjct 403 GATG----CCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGT 348 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 | |||| | ||| ||| | ||||| || || || || || || Sbjct 347 CAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTA 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712859051745600