Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1955 161 7e-35 seq460 138 8e-28 seq395 113 3e-20 >seq1955 Length=8910 Score = 161 bits (178), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| ||||||||||| |||| Sbjct 3790 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3731 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| ||||| ||||||| |||||||| || | || Sbjct 3730 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 3671 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 3670 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCA 3613 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| | || || ||||| ||||||||||||||||||||||| |||||||| Sbjct 3612 CCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 3561 >seq460 Length=27106 Score = 138 bits (152), Expect = 8e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||||||||| |||||| || |||||||||||| || ||| |||| ||| Sbjct 24827 ACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCCTCC 24768 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||| || | ||||||||| || | ||| | ||| ||||| || Sbjct 24767 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGA 24708 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| | || || ||| | || ||||| | || || ||||| | |||||||||||| Sbjct 24707 ATCTT-GGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTCTT 24649 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| |||||||||||||| Sbjct 24648 GCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| || |||||||| |||| | ||| | || || Sbjct 24600 CACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTC 24541 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 24540 CAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTG 24481 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| | || | ||| | |||||||||| ||||| ||||| | || || |||| Sbjct 24480 GATCTT-GGATTTGACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCT 24422 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | |||||| || ||||| ||||| Sbjct 24421 TTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24391 Score = 116 bits (128), Expect = 3e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 24371 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 24312 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | |||||||||||| | || | ||| ||||| ||| Sbjct 24311 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGG 24252 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | ||||| || | ||| || ||||| | || || ||||| Sbjct 24251 ATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTCTTG 24192 Query 44309 CCCGTGA 44315 || |||| Sbjct 24191 CCGGTGA 24185 >seq395 Length=29552 Score = 113 bits (124), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| ||||| |||| Sbjct 1186 CCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1127 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 1126 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1067 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 1066 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 1009 Query 44326 GAA 44328 ||| Sbjct 1008 GAA 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359953304676735