Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1955 156 1e-32
seq460 132 1e-25
seq395 127 5e-24
seq1012 96.9 8e-15
>seq1955
Length=8910
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || ||||||||||||||||| || |||
Sbjct 3567 CAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGAC 3626
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 3627 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 3686
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| |||||||| || || | || || |||| || ||| ||
Sbjct 3687 CGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATC 3746
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 3747 CAGAAGGAGTCCACCCTCCACCTGGT 3772
>seq460
Length=27106
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || | || ||||| || ||||| |||||||| ||| || |||
Sbjct 24394 CAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCCGAC 24453
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||||||| ||||| |||||||| || || || ||||| || |||||
Sbjct 24454 ACCATTGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAGCAG 24513
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||||||||| ||||| |||||||| | ||| | |||| || ||| |
Sbjct 24514 CGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAACATT 24573
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 24574 CAGAAGGAGTCGACTCTCCACCTTGT 24599
Score = 116 bits (128), Expect = 9e-21
Identities = 138/186 (74%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| |||||||| || ||| || |||||||| ||||| ||
Sbjct 24185 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGT 24244
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| || || ||||| || || ||||| || ||||||||||| || |
Sbjct 24245 CGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAGCGTCTTATCTTCGCTGGCA 24304
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || || |||| || ||| |||| || || || || || |
Sbjct 24305 AGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 24364
Query 178123 ATCTTG 178128
| ||||
Sbjct 24365 A-CTTG 24369
>seq395
Length=29552
Score = 127 bits (140), Expect = 5e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 1005 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 1064
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| || |||||||| || |
Sbjct 1065 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTT 1124
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| ||||| | || || |||| || ||| |||| ||
Sbjct 1125 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATCCAGAA 1184
>seq1012
Length=16087
Score = 96.9 bits (106), Expect = 8e-15
Identities = 176/255 (69%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187
||| ||||||||||| |||||| ||||| ||||| ||||| || | ||
Sbjct 1126 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGT 1067
Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247
|||| ||||| | |||||| || |||||| | ||||||||| | | ||| | |
Sbjct 1066 CTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGC-GAC 1008
Query 214248 TCTT-CCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306
||| ||| | |||||||| || || || | ||| || ||| |||||| ||
Sbjct 1007 CCTTGCCCATCTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGG 948
Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366
||||||| ||| |||||||||||| | ||| |||| | ||| || | | ||||| |
Sbjct 947 CAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCT 888
Query 214367 TCATGAAAAGGTCGG 214381
||||||| || ||||
Sbjct 887 TCATGAAGAGATCGG 873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203600800175270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |