Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1955 172 5e-38 seq395 132 4e-26 seq460 116 3e-21 seq3 104 2e-17 >seq1955 Length=8910 Score = 172 bits (190), Expect = 5e-38 Identities = 179/233 (77%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | |||||| || || ||| ||||||||| ||||| |||||| Sbjct 3793 CCACCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3734 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| | | Sbjct 3733 GACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGG 3674 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | |||||| ||||| Sbjct 3673 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACT 3616 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 3615 CCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 3563 >seq395 Length=29552 Score = 132 bits (146), Expect = 4e-26 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||||||||| || | || |||||||||||||||||||| | Sbjct 1186 CCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1127 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 1126 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1067 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 1066 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 1009 Query 41851 GAAA 41854 |||| Sbjct 1008 GAAA 1005 >seq460 Length=27106 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||||||||||||| |||||||| Sbjct 24617 CCACCACGGAGACGAAGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 24558 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| |||||||| |||| ||||| || || | ||| Sbjct 24557 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGA 24498 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || | || ||| | | | |||||| || || || Sbjct 24497 ATGCCCTCCTTGTCC-TGGATCTTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGAC 24439 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| || || |||||||| Sbjct 24438 CTCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24391 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || ||||| ||||||||||||||| || ||| Sbjct 24845 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTC 24786 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || || || || || ||||| ||||| | || Sbjct 24785 AGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGG 24726 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| | | ||| | || | || |||| | | | ||||| ||||| || Sbjct 24725 ATACCCTCCTTAT-CTTGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAAC 24667 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || |||| ||||| ||||| || ||||| Sbjct 24666 CTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 Score = 111 bits (122), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 24389 CCACCACGGAGACGAAGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 24330 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| || || ||||| || || | ||| Sbjct 24329 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGG 24270 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | | |||||||||| ||| || ||||| Sbjct 24269 ATACCCTCCTTGTCCTGGATCTTCGACTTCA 24239 >seq3 Length=97984 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || || || || || |||||||||||| |||| || |||||| ||||||||| ||| Sbjct 77769 CGCATTGCCCCGCGCTCCGGCCTCGCCGCCAAGAACTTCATCGACACGGGCGCCGGCGTC 77828 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGAAG 85914 |||||||||||||||||||| | |||| || | ||||||||||||| ||||| Sbjct 77829 ATCGACGCCGACTACCGCGGTGAGGTCAAGGTCCTCCTCTTCAACCACGCCGAAG 77883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462255140246000