Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3410 150 4e-31
>seq3410
Length=4507
Score = 150 bits (166), Expect = 4e-31
Identities = 356/526 (68%), Gaps = 15/526 (3%)
Strand=Plus/Minus
Query 230123 TTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCGT---TTGCCG 230179
||| ||| ||||| | ||||||| || ||| | | || ||||| | | |||
Sbjct 2222 TTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAATCTTCATTCGCCC 2163
Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CC 230238
||||||| ||||| | | ||||| ||||| | || ||| ||| ||| ||
Sbjct 2162 AGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC-GCGTCC 2104
Query 230239 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 230298
||||| ||||| ||| ||| | ||||| ||||| | || |||||| |||||
Sbjct 2103 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATC 2044
Query 230299 AGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAA 230357
||| || ||||| ||||| || | | |||| | || |||| || | ||| ||||
Sbjct 2043 TCTCGTGATGAGGGACTCCA-CACCGACTTCGCCTGCCTGCTGTACTCCCATCTCAAGAA 1985
Query 230358 CAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414
| | ||| | || ||||| | | ||||| || || || | | ||| |
Sbjct 1984 CCGCC--CCAG-CAAGCAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGATCGAGCA 1928
Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT-ATGG 230473
||||||| | ||| || | || ||| ||| ||||||||||| | ||||| |||
Sbjct 1927 GGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTTGGCATGAACTCC-AACTTGATGA 1869
Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533
|||||||| || ||||| ||||||||| || | ||||| ||||| |||| || || |
Sbjct 1868 AGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTGGTTGCTCTTGGCAACGACAAGGTCT 1809
Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593
|||| ||| |||||||| | || |||||| ||| || || || ||||||||||
Sbjct 1808 ACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACT 1749
Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
|||| || |||||||| |||||| |||| | | ||||| |||||
Sbjct 1748 TCTTTGAGAAGCGTGTTGCTGACTACCAGAAGGCCGGTGTCATGAA 1703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057685281258050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |