Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3410 150 4e-31 >seq3410 Length=4507 Score = 150 bits (166), Expect = 4e-31 Identities = 356/526 (68%), Gaps = 15/526 (3%) Strand=Plus/Minus Query 230123 TTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCGT---TTGCCG 230179 ||| ||| ||||| | ||||||| || ||| | | || ||||| | | ||| Sbjct 2222 TTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAATCTTCATTCGCCC 2163 Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCG-CC 230238 ||||||| ||||| | | ||||| ||||| | || ||| ||| ||| || Sbjct 2162 AGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC-GCGTCC 2104 Query 230239 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 230298 ||||| ||||| ||| ||| | ||||| ||||| | || |||||| ||||| Sbjct 2103 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATC 2044 Query 230299 AGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAA 230357 ||| || ||||| ||||| || | | |||| | || |||| || | ||| |||| Sbjct 2043 TCTCGTGATGAGGGACTCCA-CACCGACTTCGCCTGCCTGCTGTACTCCCATCTCAAGAA 1985 Query 230358 CAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAAAA 230414 | | ||| | || ||||| | | ||||| || || || | | ||| | Sbjct 1984 CCGCC--CCAG-CAAGCAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGATCGAGCA 1928 Query 230415 GGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT-ATGG 230473 ||||||| | ||| || | || ||| ||| ||||||||||| | ||||| ||| Sbjct 1927 GGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTTGGCATGAACTCC-AACTTGATGA 1869 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 |||||||| || ||||| ||||||||| || | ||||| ||||| |||| || || | Sbjct 1868 AGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTGGTTGCTCTTGGCAACGACAAGGTCT 1809 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 |||| ||| |||||||| | || |||||| ||| || || || |||||||||| Sbjct 1808 ACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACT 1749 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||| || |||||||| |||||| |||| | | ||||| ||||| Sbjct 1748 TCTTTGAGAAGCGTGTTGCTGACTACCAGAAGGCCGGTGTCATGAA 1703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057685281258050