Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq3410 114 1e-20
>seq3410
Length=4507
Score = 114 bits (126), Expect = 1e-20
Identities = 199/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || |||||||| ||| ||| | |||||||| ||||||||||| |||||
Sbjct 2338 ATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGG 2397
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||||||||||| ||| || | | || ||||| || ||| || || | ||
Sbjct 2398 AAGCCGTAAAAGCATCTGGCCTCGGGAACCTGTACTTCGCCGCTGAAGCGCTCAACCAGG 2457
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||| |||||||| ||| |||||||| || || | || ||| ||||| ||
Sbjct 2458 TTCTCGTTGACGATGCCATCGGAGGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTAC 2517
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
|| || || || || | | |||||| | | ||| || || | ||| | |||
Sbjct 2518 TTCTCATCCTCGTTGATCTTGTTGTTCCAGTCATGGAGATCCTTTGACAGATCAATTTCC 2577
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|||| ||||||||| ||| | ||||| || ||||| | ||| ||
Sbjct 2578 TCGGCTGTCCAAAAAGAGGCCTCAGCCTTCTTGTACATCTGCCAGAT 2624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517479386509800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |