Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3410 114 1e-20 >seq3410 Length=4507 Score = 114 bits (126), Expect = 1e-20 Identities = 199/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| ||| ||| | |||||||| ||||||||||| ||||| Sbjct 2338 ATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGG 2397 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||||||||||| ||| || | | || ||||| || ||| || || | || Sbjct 2398 AAGCCGTAAAAGCATCTGGCCTCGGGAACCTGTACTTCGCCGCTGAAGCGCTCAACCAGG 2457 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| |||||||| ||| |||||||| || || | || ||| ||||| || Sbjct 2458 TTCTCGTTGACGATGCCATCGGAGGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTAC 2517 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || || || || || | | |||||| | | ||| || || | ||| | ||| Sbjct 2518 TTCTCATCCTCGTTGATCTTGTTGTTCCAGTCATGGAGATCCTTTGACAGATCAATTTCC 2577 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||| ||||||||| ||| | ||||| || ||||| | ||| || Sbjct 2578 TCGGCTGTCCAAAAAGAGGCCTCAGCCTTCTTGTACATCTGCCAGAT 2624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517479386509800