Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2519 185 1e-41 >seq2519 Length=5298 Score = 185 bits (204), Expect = 1e-41 Identities = 734/1144 (64%), Gaps = 22/1144 (2%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769 || ||||| || || || || ||||| | || | | ||| || | || ||||||||||| Sbjct 2712 GAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTCAGTGCA 2654 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || ||| | ||||| || | || | || || ||||| ||| ||||| Sbjct 2653 CAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 2594 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | ||||| || |||||| || | || || | ||||| Sbjct 2593 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAG 2534 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTC--TCT-TTCGTATAGTGTATACAA 53946 ||||||| || | ||| || ||| | ||| |||||| |||||| Sbjct 2533 CTTCTGAGCCTTCATGGTC---TTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAA 2477 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 |||||||| || || | | | |||| || || || |||| || ||||| | Sbjct 2476 GGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAG 2417 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||| ||||||| | || |||| ||||| |||||||| |||||||| || || | Sbjct 2416 AGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAG 2357 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 ||| || || | | | ||||| ||||| |||||| ||||| | ||| | Sbjct 2356 AAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTC 2297 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | || | ||||| || || | ||| |||| | | || || || ||||| || Sbjct 2296 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACC 2237 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 ||||| || | ||| | ||| ||||| || | || | | ||| || | || ||||| Sbjct 2236 ACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATT 2177 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 54306 ||| | ||||||||| |||| || ||| ||| |||||||||| || || Sbjct 2176 GGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAG 2117 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 || || || || ||||| || ||||| | ||||| || | || |||||||| || Sbjct 2116 GCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACC 2057 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||| || ||| ||| |||||| | || || ||| || | ||| | || Sbjct 2056 CTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGT 1997 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || || || || | || ||||| |||||||| || | || || | | ||||| Sbjct 1996 ACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTA 1937 Query 54487 CGTCTCGATA----GCTGA--GTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 54540 || ||||| ||| | ||| | |||| |||| || || ||||||||||| Sbjct 1936 GGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGACACGCAT 1883 Query 54541 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 | |||||| || || || ||| |||||||| || | || || | ||| ||| | || Sbjct 1882 GATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTC 1823 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 ||| ||||| || || || || | ||| ||||| || ||||| | ||| | |||| Sbjct 1822 CAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGTC 1763 Query 54661 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT 54719 ||| | ||||| | | |||| |||| || | ||| | ||| || || || Sbjct 1762 GAGCTCTTCCTTGTGCCTCATAACGGCATCGTATGT-GTCCTTGGCAATCATGGGCGACG 1704 Query 54720 GTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtt 54779 || || || ||||| ||||| |||| | | | ||| | | || | || | | Sbjct 1703 CCTTGCCGTTCTTAGGGTTGACGTAGTGATAGAGATCACTGACGACGGCGGACCATTGCT 1644 Query 54780 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 54839 | || |||| ||||| || || || || || || | ||| || || ||||| || || | Sbjct 1643 TCTTGGTTTGCTTGTGGAGGTTGGAAACTGCGATGCGAGCAGCCAGGATGGCGTAGTCGG 1584 Query 54840 GATG 54843 | || Sbjct 1583 GGTG 1580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593645640742800