Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 185 1e-41
>seq2519
Length=5298
Score = 185 bits (204), Expect = 1e-41
Identities = 734/1144 (64%), Gaps = 22/1144 (2%)
Strand=Plus/Minus
Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769
|| ||||| || || || || ||||| | || | | ||| || | || |||||||||||
Sbjct 2712 GAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTCAGTGCA 2654
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829
|| ||| | ||||| || | || | || || ||||| ||| |||||
Sbjct 2653 CAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 2594
Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889
||| || || ||||| || | ||||| || |||||| || | || || | |||||
Sbjct 2593 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAG 2534
Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTC--TCT-TTCGTATAGTGTATACAA 53946
||||||| || | ||| || ||| | ||| |||||| ||||||
Sbjct 2533 CTTCTGAGCCTTCATGGTC---TTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAA 2477
Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006
|||||||| || || | | | |||| || || || |||| || ||||| |
Sbjct 2476 GGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAG 2417
Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066
| ||| ||||||| | || |||| ||||| |||||||| |||||||| || || |
Sbjct 2416 AGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAG 2357
Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126
||| || || | | | ||||| ||||| |||||| ||||| | ||| |
Sbjct 2356 AAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGTC 2297
Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186
| | || | ||||| || || | ||| |||| | | || || || ||||| ||
Sbjct 2296 GAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACC 2237
Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246
||||| || | ||| | ||| ||||| || | || | | ||| || | || |||||
Sbjct 2236 ACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATT 2177
Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 54306
||| | ||||||||| |||| || ||| ||| |||||||||| || ||
Sbjct 2176 GGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAG 2117
Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366
|| || || || ||||| || ||||| | ||||| || | || |||||||| ||
Sbjct 2116 GCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATACC 2057
Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426
||| || ||| ||| |||||| | || || ||| || | ||| | ||
Sbjct 2056 CTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGT 1997
Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486
|| || || || | || ||||| |||||||| || | || || | | |||||
Sbjct 1996 ACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTA 1937
Query 54487 CGTCTCGATA----GCTGA--GTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 54540
|| ||||| ||| | ||| | |||| |||| || || |||||||||||
Sbjct 1936 GGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGACACGCAT 1883
Query 54541 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600
| |||||| || || || ||| |||||||| || | || || | ||| ||| | ||
Sbjct 1882 GATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTC 1823
Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660
||| ||||| || || || || | ||| ||||| || ||||| | ||| | ||||
Sbjct 1822 CAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGTC 1763
Query 54661 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT 54719
||| | ||||| | | |||| |||| || | ||| | ||| || || ||
Sbjct 1762 GAGCTCTTCCTTGTGCCTCATAACGGCATCGTATGT-GTCCTTGGCAATCATGGGCGACG 1704
Query 54720 GTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtt 54779
|| || || ||||| ||||| |||| | | | ||| | | || | || | |
Sbjct 1703 CCTTGCCGTTCTTAGGGTTGACGTAGTGATAGAGATCACTGACGACGGCGGACCATTGCT 1644
Query 54780 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 54839
| || |||| ||||| || || || || || || | ||| || || ||||| || || |
Sbjct 1643 TCTTGGTTTGCTTGTGGAGGTTGGAAACTGCGATGCGAGCAGCCAGGATGGCGTAGTCGG 1584
Query 54840 GATG 54843
| ||
Sbjct 1583 GGTG 1580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593645640742800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |