Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3288 232 8e-56 >seq3288 Length=4615 Score = 232 bits (256), Expect = 8e-56 Identities = 430/636 (68%), Gaps = 45/636 (7%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| | ||| || | || ||||||| | ||||||||||||||| |||| |||||| Sbjct 1193 CAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCGTCGCCCATGACGTG 1134 Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 | | | ||||| ||||| | | | || | ||||| || |||| | ||| Sbjct 1133 CGTCAGGCTGCCGGGGACGAGGTCGCACGCGCGCGCAATCATGTGCGTTAGCAAAGCGTA 1074 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 |||||| |||||||||||||| || || ||||| || | || ||||||||||||||||| Sbjct 1073 GCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGGCA 1014 Query 145851 GGAGAGCT---------------------------CCCCGCCCGCC------------AC 145871 | || | | |||| ||| || Sbjct 1013 GTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGCCCGTGGGTACGAAAC 954 Query 145872 GTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGT 145930 ||||||||| ||| | | |||||| || || |||||||| |||||| || |||| Sbjct 953 GTAGAACTGCGCAAAC-ATGTGGCATGGGGGGAGGGCCATCTTCTTCAGGTCGGCGGGGT 895 Query 145931 TCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGT 145990 |||| ||| | |||| || | | | | |||||| |||||| || || | | Sbjct 894 TCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAGCTTGTGGATGACTT 835 Query 145991 CCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCC 146050 | ||||||||| || ||||| ||| |||||| |||||||| || |||||| |||| | Sbjct 834 CGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGGAATCGACGTACTCGGCGC 775 Query 146051 CGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCA 146110 |||| |||||||| ||||| ||||| ||||| || ||||| ||| ||| | |||| | Sbjct 774 CGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCTCGCGGTGCGTGA 715 Query 146111 GCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCT 146168 | ||| | | | | ||||| ||||| || |||||| ||||||||||||||||||| ||| Sbjct 714 GGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCT 655 Query 146169 CGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGAC 146228 ||| || | | ||| ||| || ||||||||| |||||||| ||| ||| Sbjct 654 CGCTCAGGG--CGAGAGAGGATGTGTTGCCTTCGATGAACCACAGCAGCTCGGCGATGAC 597 Query 146229 CCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 | | |||||| | ||| ||||| || ||||| Sbjct 596 GGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGG 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590001307049400