Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 232 8e-56
>seq3288
Length=4615
Score = 232 bits (256), Expect = 8e-56
Identities = 430/636 (68%), Gaps = 45/636 (7%)
Strand=Plus/Minus
Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730
|||||| | ||| || | || ||||||| | ||||||||||||||| |||| ||||||
Sbjct 1193 CAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCGTCGCCCATGACGTG 1134
Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790
| | | ||||| ||||| | | | || | ||||| || |||| | |||
Sbjct 1133 CGTCAGGCTGCCGGGGACGAGGTCGCACGCGCGCGCAATCATGTGCGTTAGCAAAGCGTA 1074
Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850
|||||| |||||||||||||| || || ||||| || | || |||||||||||||||||
Sbjct 1073 GCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGGCA 1014
Query 145851 GGAGAGCT---------------------------CCCCGCCCGCC------------AC 145871
| || | | |||| ||| ||
Sbjct 1013 GTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGCCCGTGGGTACGAAAC 954
Query 145872 GTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGT 145930
||||||||| ||| | | |||||| || || |||||||| |||||| || ||||
Sbjct 953 GTAGAACTGCGCAAAC-ATGTGGCATGGGGGGAGGGCCATCTTCTTCAGGTCGGCGGGGT 895
Query 145931 TCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGT 145990
|||| ||| | |||| || | | | | |||||| |||||| || || | |
Sbjct 894 TCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAGCTTGTGGATGACTT 835
Query 145991 CCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCC 146050
| ||||||||| || ||||| ||| |||||| |||||||| || |||||| |||| |
Sbjct 834 CGGCGAGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGGAATCGACGTACTCGGCGC 775
Query 146051 CGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCA 146110
|||| |||||||| ||||| ||||| ||||| || ||||| ||| ||| | |||| |
Sbjct 774 CGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCTCGCGGTGCGTGA 715
Query 146111 GCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCT 146168
| ||| | | | | ||||| ||||| || |||||| ||||||||||||||||||| |||
Sbjct 714 GGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCCAGATCTTGACGCCCGCCT 655
Query 146169 CGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGAC 146228
||| || | | ||| ||| || ||||||||| |||||||| ||| |||
Sbjct 654 CGCTCAGGG--CGAGAGAGGATGTGTTGCCTTCGATGAACCACAGCAGCTCGGCGATGAC 597
Query 146229 CCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264
| | |||||| | ||| ||||| || |||||
Sbjct 596 GGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGG 561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590001307049400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |