Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3410 181 1e-40 seq7566 143 3e-29 seq1773 105 7e-18 seq1878 91.5 2e-13 >seq3410 Length=4507 Score = 181 bits (200), Expect = 1e-40 Identities = 286/407 (70%), Gaps = 2/407 (0%) Strand=Plus/Minus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| | |||| ||||| || ||||| ||||| ||||| ||||||| || ||| Sbjct 2169 TTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 2110 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| || ||||||||||| || || ||||||||||||||||| ||| ||||||| Sbjct 2109 GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAG 2050 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 |||||||| | || ||||| || || |||||| ||||| |||||| | ||| | Sbjct 2049 CTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTCCCATCTC 1990 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 | | || || ||| | | | | ||| ||| || ||| |||||| |||||| Sbjct 1989 AAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGATCGAG 1930 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 ||| ||||| || ||||| |||| |||| ||||| || | || | | | ||| Sbjct 1929 CAGGAGTTCCTGACTGAAGCCTTGCCTTGTGC-CCTGCTTGGCATGAACTCCAACTTGAT 1871 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA 117387 | ||| ||||| ||||||||||||||| | || ||| | | || | | || |||| Sbjct 1870 GAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTGGTTGCTCTTGGCAACGACAAGGT 1811 Query 117388 CTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||||| | ||||| ||| | ||||||| ||| Sbjct 1810 CTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGG 1764 Score = 150 bits (166), Expect = 2e-31 Identities = 207/286 (72%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || || ||||| | |||||| | || ||| Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751 || ||||| | | | |||||| | | || |||| | ||| | |||||| Sbjct 2564 TCAAAGGATCTCCAT-GACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTC 2506 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||| | || ||||| ||||||||| ||| ||||||||||||||||| ||||| ||||| Sbjct 2505 GCACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGAGCG 2446 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || || ||||| ||||||| | ||||| |||||||| |||||| || Sbjct 2445 CTTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATCATGAT 2386 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || ||||||||||| ||| Sbjct 2385 GGAGAACATTCACTCCGAGACCTACTCCCTGCTCATCGACACCTAC 2340 >seq7566 Length=2327 Score = 143 bits (158), Expect = 3e-29 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 1237 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCC 1296 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 1297 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCAG 1356 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 1357 CAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 1416 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || || ||||| || | || || Sbjct 1417 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 1463 >seq1773 Length=6176 Score = 105 bits (116), Expect = 7e-18 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 5161 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSATC 5220 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| |||||| | |||||||| || | Sbjct 5221 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTTG 5280 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || |||| |||||||| |||||||||||| |||||| Sbjct 5281 ATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAAG 5340 Query 40879 G 40879 | Sbjct 5341 G 5341 >seq1878 Length=6026 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||| ||||| | |||||||| || | |||| ||| ||||| || || || Sbjct 5839 GATAAGGAGGGTATCCCTCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAG 5780 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || | ||||||||||||||||||||| | ||||| || || || | Sbjct 5779 GACGGCCGCACACTGAGTGACTACAACATCCAGAAGGAGTCGACGCTTCACCTCGTCCTC 5720 Query 40903 CGCTTGAGGGGCGGC 40917 || || | |||||| Sbjct 5719 CGTCTGCGTGGCGGC 5705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515153284143600