Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 96.9 4e-15
seq1878 84.2 3e-11
>seq7566
Length=2327
Score = 96.9 bits (106), Expect = 4e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||| || | ||| |||||| || || ||||| || | || || || ||
Sbjct 1451 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 1392
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || | ||||||||||||| || | | |||||||
Sbjct 1391 TCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTG 1332
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| || ||||| || | |||||
Sbjct 1331 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATA 1272
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || ||||| || ||||| || ||||| |||||
Sbjct 1271 GTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237
>seq1878
Length=6026
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| ||| ||| || || |||| || || ||||| ||||||||
Sbjct 5741 CTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAA 5800
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | ||||||||||||| || | | |||||| ||| ||| || || | |||
Sbjct 5801 GATCAAACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTCA-CGT 5859
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || ||||| || | ||| || || || || || | ||||| |
Sbjct 5860 TGTCGATCGTGTCCGAAGACTCCACCTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGA 5919
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 5920 CGAAGATCTGCAT 5932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571744443085800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |