Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 118 7e-22
seq1773 87.8 1e-12
seq1878 86.0 4e-12
>seq7566
Length=2327
Score = 118 bits (130), Expect = 7e-22
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| |||||||| | || || ||||| ||||||||||||||
Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||||||| ||||| || | |||||||||||| ||
Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | | || | |||| || || ||
Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACC 1284
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || || || ||||| || ||||| |||||||||||
Sbjct 1283 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 1237
>seq1773
Length=6176
Score = 87.8 bits (96), Expect = 1e-12
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| |||| || | ||||||||| || || ||
Sbjct 5339 TTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGATC 5280
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| |||||||||||| ||| | | ||||||||| ||||| ||| | || | |
Sbjct 5279 AAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 5220
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|| | || | || ||||| || | || ||||| || || || || || ||||| ||
Sbjct 5219 ATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 5161
>seq1878
Length=6026
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| ||||| | || || ||||| | || || ||||| ||||||||||| |
Sbjct 5706 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 5765
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | |||||||| ||||| || | |||||||||||| ||
Sbjct 5766 AGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGG 5825
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||| || ||||| ||| | | | | |||| || | || || ||
Sbjct 5826 ATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCACC 5885
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || || ||||| | || || || |||||||||||
Sbjct 5886 TCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323031700301600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |