Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 374 8e-99
seq3410 150 2e-31
seq7566 93.3 4e-14
>seq2519
Length=5298
Score = 374 bits (414), Expect = 8e-99
Identities = 1213/1865 (65%), Gaps = 51/1865 (3%)
Strand=Plus/Minus
Query 22133 GCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAA 22192
|||||| || || || ||||| |||||||||||||| ||||| | |||||| ||
Sbjct 3603 GCGGCCTGT---GTACGCAGATAGTACATGCCCGTCTTGAGACCGAGCTTCCAGCCGGCG 3547
Query 22193 AAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGA 22252
|| || || || | || || | | || | ||||| | ||||| ||||||
Sbjct 3546 AAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCTTCATGTGAATATTGAGCGACTGC 3487
Query 22253 CTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATT 22312
|||||| || || || || |||||||| ||||| | | | |||||| || |||
Sbjct 3486 GACTGATCAATGAAGGCACCACGATCGGCAGCCATCTGAACGACAGTACGCTGGGAGATT 3427
Query 22313 TCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGAC 22371
||||| |||||||||||||| | ||| |||| || || | | || | |||| |
Sbjct 3426 TCCCAAACGGTCTTGTACAGAGCCTTGACCTCTGTGGGGAT-GTTGGGAATGTTCTGAAT 3368
Query 22372 GGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGT 22431
|| ||||| | | ||||| || || || | |||| ||| | || ||| ||
Sbjct 3367 TGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCATAGGCCCATGTCGAC 3308
Query 22432 CAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTG 22491
| || || | || | |||| || || || |||||||| | | ||| ||||| ||
Sbjct 3307 AAGGTCCTTAAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTG 3248
Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551
||| ||||| || ||| | || || ||| | || ||||| |||| ||||| | ||
Sbjct 3247 GTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCT 3188
Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTA 22609
|| |||||||| ||||| | || || ||||| | | ||||||| |||| | |
Sbjct 3187 GGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTC 3128
Query 22610 CTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669
|| ||| || ||||||||| || || || ||| | ||||| |||||| || ||
Sbjct 3127 CTTCAGAGAGTC--CCAGTCCCAGAGGTCCGAAGGCTTGACATT---CCACATGTCATAC 3073
Query 22670 TGCAACACGCC--GCGACTCGCCGGGCT-GCCTTCGTACGTTTCGTACGGACCATA-TAT 22725
|| | | ||| | || | | ||| ||| |||||||| | ||| || || | | |
Sbjct 3072 TGAAGGATGCCCTGGGA---GACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCT 3016
Query 22726 CGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTT 22785
| || | | ||| | | || ||| || || ||||||||||| |||||
Sbjct 3015 TTAGCCAGCTGCACAGACATGGTG-AGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTT 2957
Query 22786 GTTCAATTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGT 22841
||| | ||| ||| || ||| ||| | ||||| || | || ||| || |
Sbjct 2956 GTTGAGGTCGCGGGCTTCGGGAGAC----TCGAAGGGCATGCGAAGAGCCAGGAAAGCAT 2901
Query 22842 CCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC-- 22899
| || | |||||| || || | || || || |||| || || ||| ||||
Sbjct 2900 CGGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATGTT----ACTGTTGCGA 2845
Query 22900 --CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT 22957
||| | | || || || ||||| ||||||||| ||| | ||||
Sbjct 2844 GCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACC 2785
Query 22958 TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTG 23014
| || | | |||||||| || ||| ||||| ||||||| ||
Sbjct 2784 TGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACAAAAGTG 2725
Query 23015 TTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTA 23072
| |||| |||||| || ||||| || || |||||||| ||| || |||||| |
Sbjct 2724 GGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCA--GGAGCGCAGTACTCAA 2667
Query 23073 CAATTTCGGTACATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTT 23129
|| || || || || || ||| | || || || | || |||||||||| |
Sbjct 2666 TGATCTCAGTGCACAGGTTAGAGCTGCGA---ATGGTACCAAGGTTCTTCTGGTTGCTCT 2610
Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGA 23189
| || ||| | |||||||||||||||| | || |||| |||||| ||| | ||| |
Sbjct 2609 TGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAA 2550
Query 23190 TGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCG 23248
||| || ||| | ||||||| | | ||| ||| ||| ||| | |||
Sbjct 2549 GGATAGCATACCAGAGCTTCTGAGCCTTCATG-GTCTTGCGTCCCTTGCCCATCTGTTCG 2491
Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308
||||| | ||||| || ||||| || | ||||| |||||||||| ||| || | |
Sbjct 2490 TACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCA 2431
Query 23309 ATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGT 23368
| || ||||| ||| |||| | || || || || | |||| || ||||| ||
Sbjct 2430 TTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGA 2371
Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428
||||| || || || || || || ||||| |||||||| || ||| ||||| |
Sbjct 2370 ATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGC 2311
Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488
| |||||| ||||| || ||||| || ||||| ||||| ||||| | |||||| || ||
Sbjct 2310 AGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCG 2251
Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548
|| | ||| || || ||||| || ||||| || |||||||||||| | || | |||||
Sbjct 2250 GGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATA 2191
Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG 23608
|| || | || ||||| | || ||| || | || || | || |||| |
Sbjct 2190 GGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATG 2131
Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668
|||||| | | || || || ||| || || || ||||| ||||| || ||
Sbjct 2130 CGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGG 2071
Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATT 23728
||||| ||||| ||||||||| || || || | |||| | ||| || || || |
Sbjct 2070 GTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGC 2011
Query 23729 TGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC 23788
|| || | || ||| | || ||| ||||| || ||||||||| ||| | |
Sbjct 2010 TGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTG 1951
Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848
||||| | ||||| || |||||| || |||| ||| || || || || | ||||
Sbjct 1950 GACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCG 1891
Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908
|| ||||| ||||||| ||| || ||||| | | ||||| || |||| || |||
Sbjct 1890 ACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTAT 1831
Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968
|| | | || ||||| || || || || | ||||| ||||| || |||| || |||
Sbjct 1830 GATCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATG 1771
Query 23969 GCCGA 23973
|| ||
Sbjct 1770 GCAGA 1766
>seq3410
Length=4507
Score = 150 bits (166), Expect = 2e-31
Identities = 241/341 (71%), Gaps = 10/341 (3%)
Strand=Plus/Minus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||||| || | || |||| ||||||||||| || ||||| ||||| || |||
Sbjct 2169 TTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 2110
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082
||| | || || ||| | ||||| || || || |||||||||||||| || |||||||
Sbjct 2109 GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAG 2050
Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142
| || || || || ||||| ||||| || || || || ||||| ||||||| || |
Sbjct 2049 CTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTCCCA---T 1993
Query 58143 GTCAATAAACCGACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGA 58197
|||| ||||| | | | | ||| || | |||||| ||| ||| |||||| ||
Sbjct 1992 CTCAA-GAACCGCCCCAGCA-AGCAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGA 1935
Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257
|||| | ||||| | || |||||| | || ||| |||| || |||||| | |
Sbjct 1934 TCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTTGGCATGAACTCCAACT 1875
Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298
||||| ||||||||||||| || |||||| | ||| ||
Sbjct 1874 TGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTG 1834
>seq7566
Length=2327
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || || || || |||||| | || || ||
Sbjct 1232 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 1291
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||| || | || ||||
Sbjct 1292 CYTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCG 1351
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| | || ||||| ||||| ||| | || ||| || | ||| |
Sbjct 1352 ACCAGCAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 1411
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || || || || ||||| || | ||| | || ||||
Sbjct 1412 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 1465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445709369761200
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