Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2519 374 8e-99 seq3410 150 2e-31 seq7566 93.3 4e-14 >seq2519 Length=5298 Score = 374 bits (414), Expect = 8e-99 Identities = 1213/1865 (65%), Gaps = 51/1865 (3%) Strand=Plus/Minus Query 22133 GCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAA 22192 |||||| || || || ||||| |||||||||||||| ||||| | |||||| || Sbjct 3603 GCGGCCTGT---GTACGCAGATAGTACATGCCCGTCTTGAGACCGAGCTTCCAGCCGGCG 3547 Query 22193 AAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGA 22252 || || || || | || || | | || | ||||| | ||||| |||||| Sbjct 3546 AAGTGCATGCTGGTGATCTTGCCCATAGTGGGATCCTTCATGTGAATATTGAGCGACTGC 3487 Query 22253 CTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATT 22312 |||||| || || || || |||||||| ||||| | | | |||||| || ||| Sbjct 3486 GACTGATCAATGAAGGCACCACGATCGGCAGCCATCTGAACGACAGTACGCTGGGAGATT 3427 Query 22313 TCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGAC 22371 ||||| |||||||||||||| | ||| |||| || || | | || | |||| | Sbjct 3426 TCCCAAACGGTCTTGTACAGAGCCTTGACCTCTGTGGGGAT-GTTGGGAATGTTCTGAAT 3368 Query 22372 GGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGT 22431 || ||||| | | ||||| || || || | |||| ||| | || ||| || Sbjct 3367 TGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCGGACCATAGGCCCATGTCGAC 3308 Query 22432 CAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTG 22491 | || || | || | |||| || || || |||||||| | | ||| ||||| || Sbjct 3307 AAGGTCCTTAAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTG 3248 Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| ||||| || ||| | || || ||| | || ||||| |||| ||||| | || Sbjct 3247 GTAGATGTTTGAGGTGTAGGGCTCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCT 3188 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTA 22609 || |||||||| ||||| | || || ||||| | | ||||||| |||| | | Sbjct 3187 GGCAGTCGGCATGGGCGCGACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTC 3128 Query 22610 CTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 || ||| || ||||||||| || || || ||| | ||||| |||||| || || Sbjct 3127 CTTCAGAGAGTC--CCAGTCCCAGAGGTCCGAAGGCTTGACATT---CCACATGTCATAC 3073 Query 22670 TGCAACACGCC--GCGACTCGCCGGGCT-GCCTTCGTACGTTTCGTACGGACCATA-TAT 22725 || | | ||| | || | | ||| ||| |||||||| | ||| || || | | | Sbjct 3072 TGAAGGATGCCCTGGGA---GACAGGCGAGCCCTCGTACGTCTGGTATGGGCCCTCCTCT 3016 Query 22726 CGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTT 22785 | || | | ||| | | || ||| || || ||||||||||| ||||| Sbjct 3015 TTAGCCAGCTGCACAGACATGGTG-AGGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTT 2957 Query 22786 GTTCAATTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGT 22841 ||| | ||| ||| || ||| ||| | ||||| || | || ||| || | Sbjct 2956 GTTGAGGTCGCGGGCTTCGGGAGAC----TCGAAGGGCATGCGAAGAGCCAGGAAAGCAT 2901 Query 22842 CCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC-- 22899 | || | |||||| || || | || || || |||| || || ||| |||| Sbjct 2900 CGGCAAGACCCTGCACACCGAGGCCAATGGGGCGGTGGCGCATGTT----ACTGTTGCGA 2845 Query 22900 --CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT 22957 ||| | | || || || ||||| ||||||||| ||| | |||| Sbjct 2844 GCCTCTTGAACGGGGTAATGGTTGACGTCGATGATTCTGTTCAGGTTGCGAACAACAACC 2785 Query 22958 TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTG 23014 | || | | |||||||| || ||| ||||| ||||||| || Sbjct 2784 TGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACAAAAGTG 2725 Query 23015 TTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTA 23072 | |||| |||||| || ||||| || || |||||||| ||| || |||||| | Sbjct 2724 GGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCA--GGAGCGCAGTACTCAA 2667 Query 23073 CAATTTCGGTACATAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTT 23129 || || || || || || ||| | || || || | || |||||||||| | Sbjct 2666 TGATCTCAGTGCACAGGTTAGAGCTGCGA---ATGGTACCAAGGTTCTTCTGGTTGCTCT 2610 Query 23130 TTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGA 23189 | || ||| | |||||||||||||||| | || |||| |||||| ||| | ||| | Sbjct 2609 TGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAA 2550 Query 23190 TGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCG 23248 ||| || ||| | ||||||| | | ||| ||| ||| ||| | ||| Sbjct 2549 GGATAGCATACCAGAGCTTCTGAGCCTTCATG-GTCTTGCGTCCCTTGCCCATCTGTTCG 2491 Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308 ||||| | ||||| || ||||| || | ||||| |||||||||| ||| || | | Sbjct 2490 TACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCA 2431 Query 23309 ATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGT 23368 | || ||||| ||| |||| | || || || || | |||| || ||||| || Sbjct 2430 TTGGGGCACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGA 2371 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 ||||| || || || || || || ||||| |||||||| || ||| ||||| | Sbjct 2370 ATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGC 2311 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 | |||||| ||||| || ||||| || ||||| ||||| ||||| | |||||| || || Sbjct 2310 AGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCG 2251 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548 || | ||| || || ||||| || ||||| || |||||||||||| | || | ||||| Sbjct 2250 GGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATA 2191 Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG 23608 || || | || ||||| | || ||| || | || || | || |||| | Sbjct 2190 GGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATG 2131 Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668 |||||| | | || || || ||| || || || ||||| ||||| || || Sbjct 2130 CGGTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGG 2071 Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATT 23728 ||||| ||||| ||||||||| || || || | |||| | ||| || || || | Sbjct 2070 GTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGC 2011 Query 23729 TGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC 23788 || || | || ||| | || ||| ||||| || ||||||||| ||| | | Sbjct 2010 TGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTG 1951 Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848 ||||| | ||||| || |||||| || |||| ||| || || || || | |||| Sbjct 1950 GACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATGCCAACGGCG 1891 Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908 || ||||| ||||||| ||| || ||||| | | ||||| || |||| || ||| Sbjct 1890 ACACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTAT 1831 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968 || | | || ||||| || || || || | ||||| ||||| || |||| || ||| Sbjct 1830 GATCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATG 1771 Query 23969 GCCGA 23973 || || Sbjct 1770 GCAGA 1766 >seq3410 Length=4507 Score = 150 bits (166), Expect = 2e-31 Identities = 241/341 (71%), Gaps = 10/341 (3%) Strand=Plus/Minus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||||| || | || |||| ||||||||||| || ||||| ||||| || ||| Sbjct 2169 TTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTC 2110 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||| | || || ||| | ||||| || || || |||||||||||||| || ||||||| Sbjct 2109 GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAG 2050 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 | || || || || ||||| ||||| || || || || ||||| ||||||| || | Sbjct 2049 CTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGTACTCCCA---T 1993 Query 58143 GTCAATAAACCGACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGA 58197 |||| ||||| | | | | ||| || | |||||| ||| ||| |||||| || Sbjct 1992 CTCAA-GAACCGCCCCAGCA-AGCAGGTCATTGAGGACATCATCGTCGATGCGGTCAAGA 1935 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 |||| | ||||| | || |||||| | || ||| |||| || |||||| | | Sbjct 1934 TCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTTGGCATGAACTCCAACT 1875 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||| ||||||||||||| || |||||| | ||| || Sbjct 1874 TGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTG 1834 >seq7566 Length=2327 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 1232 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 1291 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| || | || |||| Sbjct 1292 CYTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCG 1351 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| | || ||||| ||||| ||| | || ||| || | ||| | Sbjct 1352 ACCAGCAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 1411 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || || ||||| || | ||| | || |||| Sbjct 1412 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 1465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445709369761200