Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2519 147 3e-30 >seq2519 Length=5298 Score = 147 bits (162), Expect = 3e-30 Identities = 624/974 (64%), Gaps = 24/974 (2%) Strand=Plus/Minus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 63007 || ||||| || || || || ||||| | || | | ||| || | || ||||||||||| Sbjct 2712 GAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTCAGTGCA 2654 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || ||| | || || || | || | || || ||||| ||| ||||| Sbjct 2653 CAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 2594 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || ||||| || | ||||| || |||| | || | || || | ||||| Sbjct 2593 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGA- 2535 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTC---TCT-TTCGTATAGAGTATAC 63182 | || ||||||| || | ||| || |||| | ||| |||||| |||| Sbjct 2534 GCTTCTGAGCCTTCATGGTC---TTGCGTC-CCTTGCCCATCTGTTCGTACTTCTCATAC 2479 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 || || ||||| || || | | | |||| | || || |||| || ||||| Sbjct 2478 AAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATA 2419 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | | ||| ||||||| | || |||| ||||| |||||||| |||||||| || || Sbjct 2418 AGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCA 2359 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 | ||| || || | | | ||||| ||||| |||||| ||||| | ||| Sbjct 2358 AGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAG 2299 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | | || | ||||| || || | ||| ||||| | | || || || ||||| Sbjct 2298 TCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTA 2239 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || ||||| || | ||| | ||| ||||| || | || | | ||| || | || || Sbjct 2238 CCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCA 2179 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || || |||||||||| |||| || ||| ||| |||||||||| || Sbjct 2178 TTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTC 2119 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 || || || || || ||||| || ||||| | ||||| || | ||||||||||| Sbjct 2118 AGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATA 2059 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662 || || ||| ||| || |||||| | || || ||| || | ||| | | Sbjct 2058 CCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGG 1999 Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | || ||||| |||||||| || | || || | | ||| Sbjct 1998 GTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTG 1939 Query 63723 TACGTCTCAAT----AGCTGA--GTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63776 || || || || ||| | ||| | |||| |||| || || ||||||||| Sbjct 1938 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGACACGC 1885 Query 63777 ATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTT 63836 || | |||||| || || || ||| | || ||| || | || | | ||| ||| | Sbjct 1884 ATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTC 1825 Query 63837 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 63896 ||||| ||||| || || || || | ||| ||||| || ||||| | ||| | || Sbjct 1824 TCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAG 1765 Query 63897 TTGAGCTTATCCTT 63910 | ||||| ||||| Sbjct 1764 TCGAGCTCTTCCTT 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629737022710800