Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 147 3e-30
>seq2519
Length=5298
Score = 147 bits (162), Expect = 3e-30
Identities = 624/974 (64%), Gaps = 24/974 (2%)
Strand=Plus/Minus
Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 63007
|| ||||| || || || || ||||| | || | | ||| || | || |||||||||||
Sbjct 2712 GAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTCAGTGCA 2654
Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067
|| ||| | || || || | || | || || ||||| ||| |||||
Sbjct 2653 CAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 2594
Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127
||| || || ||||| || | ||||| || |||| | || | || || | |||||
Sbjct 2593 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGA- 2535
Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTC---TCT-TTCGTATAGAGTATAC 63182
| || ||||||| || | ||| || |||| | ||| |||||| ||||
Sbjct 2534 GCTTCTGAGCCTTCATGGTC---TTGCGTC-CCTTGCCCATCTGTTCGTACTTCTCATAC 2479
Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242
|| || ||||| || || | | | |||| | || || |||| || |||||
Sbjct 2478 AAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATA 2419
Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302
| | ||| ||||||| | || |||| ||||| |||||||| |||||||| || ||
Sbjct 2418 AGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCA 2359
Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362
| ||| || || | | | ||||| ||||| |||||| ||||| | |||
Sbjct 2358 AGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAG 2299
Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422
| | | || | ||||| || || | ||| ||||| | | || || || |||||
Sbjct 2298 TCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTA 2239
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
|| ||||| || | ||| | ||| ||||| || | || | | ||| || | || ||
Sbjct 2238 CCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCA 2179
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542
|| || |||||||||| |||| || ||| ||| |||||||||| ||
Sbjct 2178 TTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTC 2119
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
|| || || || || ||||| || ||||| | ||||| || | |||||||||||
Sbjct 2118 AGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATA 2059
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTA 63662
|| || ||| ||| || |||||| | || || ||| || | ||| | |
Sbjct 2058 CCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGG 1999
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
|| || || || || | || ||||| |||||||| || | || || | | |||
Sbjct 1998 GTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTG 1939
Query 63723 TACGTCTCAAT----AGCTGA--GTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63776
|| || || || ||| | ||| | |||| |||| || || |||||||||
Sbjct 1938 TAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGACACGC 1885
Query 63777 ATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTT 63836
|| | |||||| || || || ||| | || ||| || | || | | ||| ||| |
Sbjct 1884 ATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTC 1825
Query 63837 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 63896
||||| ||||| || || || || | ||| ||||| || ||||| | ||| | ||
Sbjct 1824 TCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAG 1765
Query 63897 TTGAGCTTATCCTT 63910
| ||||| |||||
Sbjct 1764 TCGAGCTCTTCCTT 1751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629737022710800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |