Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 161 1e-34
>seq2519
Length=5298
Score = 161 bits (178), Expect = 1e-34
Identities = 626/973 (64%), Gaps = 22/973 (2%)
Strand=Plus/Minus
Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 65800
|| ||||| || || || || ||||| | || | | ||| || | || |||||||||||
Sbjct 2712 GAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTCAGTGCA 2654
Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860
|| ||| | ||||| || | || | || || ||||| ||| |||||
Sbjct 2653 CAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 2594
Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920
||| || || ||||| || | ||||| || |||| | || | || || | |||||
Sbjct 2593 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGA- 2535
Query 65921 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC--TCT-TTCGTATAGTGTATACA 65976
| || ||||||| || | ||| || ||| | ||| |||||| |||||
Sbjct 2534 GCTTCTGAGCCTTCATGGTC---TTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACA 2478
Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036
| || ||||| || || | | | |||| || || || |||| || ||||| |
Sbjct 2477 AGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAA 2418
Query 66037 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096
| ||| ||||||| | || |||| ||||| |||||||| |||||||| || || |
Sbjct 2417 GAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAA 2358
Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156
||| | || | | | ||||| ||||| |||||| ||||| | |||
Sbjct 2357 GAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGT 2298
Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216
| | | || ||||| || || | ||| ||||| | | || || || ||||| |
Sbjct 2297 CGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTAC 2238
Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276
| ||||| || | ||| | ||| ||||| || | || | | ||| || | || ||||
Sbjct 2237 CACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCAT 2178
Query 66277 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATA 66336
|||| ||||||||||| |||| || ||| ||| | |||||||| || |
Sbjct 2177 TGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCA 2118
Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396
| || || || || ||||| || ||||| | ||||| || | || |||||||| |
Sbjct 2117 GGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATAC 2058
Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456
|||| || ||| ||| |||||| | || || ||| || | ||| | |
Sbjct 2057 CCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGG 1998
Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516
| || || || || | || ||||| |||||||| || | || || | | ||||
Sbjct 1997 TACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGT 1938
Query 66517 ACGTCTCAAT----AGCTGA--GTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 66570
| || || || ||| | ||| | |||| |||| || || ||||||||||
Sbjct 1937 AGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGACACGCA 1884
Query 66571 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 66630
| | |||||| || || || ||| |||||||| || | || | | ||| ||| | |
Sbjct 1883 TGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCT 1824
Query 66631 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690
|||| ||||| || || || || | ||| ||||| || ||||| | ||| | ||||
Sbjct 1823 CCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGT 1764
Query 66691 TGAGTTTATCCTT 66703
||| | |||||
Sbjct 1763 CGAGCTCTTCCTT 1751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658088595017400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |