Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 104 2e-17
>seq3288
Length=4615
Score = 104 bits (114), Expect = 2e-17
Identities = 310/478 (65%), Gaps = 54/478 (11%)
Strand=Plus/Minus
Query 20912 CAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTG 20971
|||||| | | || | ||| ||||||| | ||| ||||| ||||| |||| | |||
Sbjct 1193 CAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCGTCGCCCATGACGTG 1134
Query 20972 CACAAAGTCTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGT 21030
| | | || |||||| | ||| | || | || |||| | ||| || | ||||
Sbjct 1133 CGTCAGG-CTGCCGGGGACGAGGTCGCACGCGCGCGCAATCATGTGCGTTAGCAAAGCGT 1075
Query 21031 AGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGC 21090
||||||||||||| || || || ||||||||||| ||| ||||| ||||||||||||||
Sbjct 1074 AGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGGC 1015
Query 21091 AGGACAGCT---------------------------CCCCCCGAGCC------------A 21111
|| ||| | | || || ||| |
Sbjct 1014 AGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGCCCGTGGGTACGAAA 955
Query 21112 CGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170
|||| ||||| | |||| | ||| || || ||||| |||||| | ||||| ||||||
Sbjct 954 CGTAGAACTG-CGCAAACATGTGGCATGGGGGGAGGGCCATCTTCTTCAGGTCGGCGGGG 896
Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCAC 21226
|||||||||| || | |||||| || || | ||| | || | | ||| ||
Sbjct 895 TTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAGCTTGTGGAT-GAC 837
Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286
|| || |||||||| || ||||| ||| ||| | | | || | ||||||
Sbjct 836 TTCG--GCG-AGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGGAATCGACGTACTC 780
Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC---CTCGCGG 21341
|| || ||||| ||||| ||||| |||||||| || || || ||||| |||||||
Sbjct 779 GGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCTCGCGG 722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427722639622800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |