Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3288 104 2e-17 >seq3288 Length=4615 Score = 104 bits (114), Expect = 2e-17 Identities = 310/478 (65%), Gaps = 54/478 (11%) Strand=Plus/Minus Query 20912 CAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTG 20971 |||||| | | || | ||| ||||||| | ||| ||||| ||||| |||| | ||| Sbjct 1193 CAGCTGCACCTTGAGTGCATCGACGTGGTCGGCGTAGACGTGCGCGTCGCCCATGACGTG 1134 Query 20972 CACAAAGTCTCCCGGGGTC-AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGT 21030 | | | || |||||| | ||| | || | || |||| | ||| || | |||| Sbjct 1133 CGTCAGG-CTGCCGGGGACGAGGTCGCACGCGCGCGCAATCATGTGCGTTAGCAAAGCGT 1075 Query 21031 AGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGC 21090 ||||||||||||| || || || ||||||||||| ||| ||||| |||||||||||||| Sbjct 1074 AGCTGGCGATGTTGAAGGGCACACCGAGGCCCATATCGCAGGACCGCTGGTACAGCTGGC 1015 Query 21091 AGGACAGCT---------------------------CCCCCCGAGCC------------A 21111 || ||| | | || || ||| | Sbjct 1014 AGTGCAGGTGGCCCTTGGTCTTCTCTTGCGTACTTGCGCCGCGGGCCCGTGGGTACGAAA 955 Query 21112 CGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 |||| ||||| | |||| | ||| || || ||||| |||||| | ||||| |||||| Sbjct 954 CGTAGAACTG-CGCAAACATGTGGCATGGGGGGAGGGCCATCTTCTTCAGGTCGGCGGGG 896 Query 21171 TTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCAC 21226 |||||||||| || | |||||| || || | ||| | || | | ||| || Sbjct 895 TTCCACGCGCTCAGGAGGATGCGGCGGTCATAGGGGTTTGTCTTGAGCTTGTGGAT-GAC 837 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286 || || |||||||| || ||||| ||| ||| | | | || | |||||| Sbjct 836 TTCG--GCG-AGCTGGTCGACACCCTGGCCCGTGTAATCCGTCTTGGAATCGACGTACTC 780 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC---CTCGCGG 21341 || || ||||| ||||| ||||| |||||||| || || || ||||| ||||||| Sbjct 779 GGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCTCGCGG 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427722639622800