Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 176 6e-39
>seq2519
Length=5298
Score = 176 bits (194), Expect = 6e-39
Identities = 633/979 (65%), Gaps = 22/979 (2%)
Strand=Plus/Minus
Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTC 79673
|||| || ||||| || || || || ||||| | || | | ||| || | || || ||
Sbjct 2718 GCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTC 2660
Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733
|||||| |||||| | |||||| || | || | || || ||||| |||
Sbjct 2659 AGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 2600
Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793
|||||||| || || ||||| || | ||||| || |||| | || | || || |
Sbjct 2599 GGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATA 2540
Query 79794 CCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTC--TCT-TTCGTATTGTG 79849
||||| | || ||||||| || | |||| || ||| | ||| |||||| |
Sbjct 2539 CCAGA-GCTTCTGAGCCTTCATGGT---CTTGCGTCCCTTGCCCATCTGTTCGTACTTCT 2484
Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909
||| || || ||||| || || | ||| | || || || || || | || |
Sbjct 2483 CATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGC 2424
Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969
|||| | | ||| ||||| | | || |||| ||||| |||||||| |||||||| |
Sbjct 2423 ACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGA 2364
Query 79970 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 80029
| || | ||| || || | | | |||||| ||||| |||||| ||||| |
Sbjct 2363 GGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCA 2304
Query 80030 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTT 80089
||| | | | || | ||||| || || | ||| ||||| | | || || || |
Sbjct 2303 AGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCT 2244
Query 80090 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 80149
|||| || ||||| || | ||| | ||| ||||| || | || | | ||| || | ||
Sbjct 2243 TGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAA 2184
Query 80150 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 80209
|||||||| ||||||||||| |||| || ||| ||| |||||||||| ||
Sbjct 2183 CGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAA 2124
Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269
|| || || || || ||||| || ||||| | ||||| || | || ||||
Sbjct 2123 CATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCAT 2064
Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329
|||| ||||| ||| ||| || |||||| | || || ||| || | |||
Sbjct 2063 AGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCT 2004
Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389
| || || || || || | || ||||| |||||||| || | || |||| |
Sbjct 2003 GTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCA 1944
Query 80390 GATTGTACGTCTCAAT----AGCTGA--TTCTATATCCCATTGATGAATTCCTACCGCGA 80443
||||| || || || ||| | || | |||| |||| || || ||||
Sbjct 1943 AGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGA 1890
Query 80444 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAG 80503
||||||| | |||||| || || || ||| |||||||| | | || | | ||| |
Sbjct 1889 CACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATG 1830
Query 80504 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 80563
|| | ||||| ||||| || || || || | ||| ||||| || ||||| | |||
Sbjct 1829 ATCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGG 1770
Query 80564 CCGAGTTGAGTTTATCCTT 80582
| |||| ||| | |||||
Sbjct 1769 CAGAGTCGAGCTCTTCCTT 1751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718176906485400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |