Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2519 176 6e-39 >seq2519 Length=5298 Score = 176 bits (194), Expect = 6e-39 Identities = 633/979 (65%), Gaps = 22/979 (2%) Strand=Plus/Minus Query 79615 GCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTC 79673 |||| || ||||| || || || || ||||| | || | | ||| || | || || || Sbjct 2718 GCGAGCGAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTC 2660 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 |||||| |||||| | |||||| || | || | || || ||||| ||| Sbjct 2659 AGTGCACAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGC 2600 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 |||||||| || || ||||| || | ||||| || |||| | || | || || | Sbjct 2599 GGCATCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATA 2540 Query 79794 CCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTC--TCT-TTCGTATTGTG 79849 ||||| | || ||||||| || | |||| || ||| | ||| |||||| | Sbjct 2539 CCAGA-GCTTCTGAGCCTTCATGGT---CTTGCGTCCCTTGCCCATCTGTTCGTACTTCT 2484 Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909 ||| || || ||||| || || | ||| | || || || || || | || | Sbjct 2483 CATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGC 2424 Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 |||| | | ||| ||||| | | || |||| ||||| |||||||| |||||||| | Sbjct 2423 ACATAAGAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGA 2364 Query 79970 GAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 80029 | || | ||| || || | | | |||||| ||||| |||||| ||||| | Sbjct 2363 GGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCA 2304 Query 80030 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTT 80089 ||| | | | || | ||||| || || | ||| ||||| | | || || || | Sbjct 2303 AGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCT 2244 Query 80090 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 80149 |||| || ||||| || | ||| | ||| ||||| || | || | | ||| || | || Sbjct 2243 TGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAA 2184 Query 80150 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 80209 |||||||| ||||||||||| |||| || ||| ||| |||||||||| || Sbjct 2183 CGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAA 2124 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 || || || || || ||||| || ||||| | ||||| || | || |||| Sbjct 2123 CATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCAT 2064 Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 |||| ||||| ||| ||| || |||||| | || || ||| || | ||| Sbjct 2063 AGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCT 2004 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 | || || || || || | || ||||| |||||||| || | || |||| | Sbjct 2003 GTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCA 1944 Query 80390 GATTGTACGTCTCAAT----AGCTGA--TTCTATATCCCATTGATGAATTCCTACCGCGA 80443 ||||| || || || ||| | || | |||| |||| || || |||| Sbjct 1943 AGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGA 1890 Query 80444 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAG 80503 ||||||| | |||||| || || || ||| |||||||| | | || | | ||| | Sbjct 1889 CACGCATGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATG 1830 Query 80504 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 80563 || | ||||| ||||| || || || || | ||| ||||| || ||||| | ||| Sbjct 1829 ATCTCTCCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGG 1770 Query 80564 CCGAGTTGAGTTTATCCTT 80582 | |||| ||| | ||||| Sbjct 1769 CAGAGTCGAGCTCTTCCTT 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718176906485400