Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2519 98.7 1e-15 seq3410 96.9 5e-15 >seq2519 Length=5298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || |||||||| || | | ||||| | ||||| |||||||||||| Sbjct 3636 TCCTGGTCAACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATG 3577 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || |||||||| |||| ||| || ||||| || || | ||| |||| | Sbjct 3576 CCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAG-T 3518 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||||| ||||||||||| | |||||| ||||| |||||||| || | || || Sbjct 3517 GGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGC 3458 Query 70968 AGCCAT 70973 |||||| Sbjct 3457 AGCCAT 3452 >seq3410 Length=4507 Score = 96.9 bits (106), Expect = 5e-15 Identities = 177/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || ||||| || ||||||||||||| |||| Sbjct 2368 TCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCATCTGGCCTCGGGAACC 2427 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 |||||||| | || || ||| | | || ||||| || || || || ||| || Sbjct 2428 TGTACTTCGCCGCTGAAGCGCTCAACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCG 2487 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAA 42538 || || || | | || || || || || || || || || | | || ||||| Sbjct 2488 AAGAAGGCGAGAATGTGCGAGATGAAGTACTTCTCATCCTCGTTGATCTTGTTGTTCCAG 2547 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 |||| || ||| || || | ||| | ||| || | |||||||| || || || ||||| Sbjct 2548 TCATGGAGATCCTTTGACAGATCAATTTCCTCGGCTGTCCAAAAAGAGGCCTCAGCCTTC 2607 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | |||||| Sbjct 2608 TTGTACATCTGCCAGAT 2624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671053336128600