Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 98.7 1e-15
seq3410 96.9 5e-15
>seq2519
Length=5298
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || |||||||| || | | ||||| | ||||| ||||||||||||
Sbjct 3636 TCCTGGTCAACGGTGAACTGAATAGGCGCAGCAGCGGCCTGTGTACGCAGATAGTACATG 3577
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907
|| || || |||||||| |||| ||| || ||||| || || | ||| |||| |
Sbjct 3576 CCCGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATAG-T 3518
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
||||| ||||||||||| | |||||| ||||| |||||||| || | || ||
Sbjct 3517 GGGATCCTTCATGTGAATATTGAGCGACTGCGACTGATCAATGAAGGCACCACGATCGGC 3458
Query 70968 AGCCAT 70973
||||||
Sbjct 3457 AGCCAT 3452
>seq3410
Length=4507
Score = 96.9 bits (106), Expect = 5e-15
Identities = 177/257 (69%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| || |||||||| || || ||||| || ||||| || ||||||||||||| ||||
Sbjct 2368 TCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCATCTGGCCTCGGGAACC 2427
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|||||||| | || || ||| | | || ||||| || || || || ||| ||
Sbjct 2428 TGTACTTCGCCGCTGAAGCGCTCAACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCG 2487
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCAA 42538
|| || || | | || || || || || || || || || | | || |||||
Sbjct 2488 AAGAAGGCGAGAATGTGCGAGATGAAGTACTTCTCATCCTCGTTGATCTTGTTGTTCCAG 2547
Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598
|||| || ||| || || | ||| | ||| || | |||||||| || || || |||||
Sbjct 2548 TCATGGAGATCCTTTGACAGATCAATTTCCTCGGCTGTCCAAAAAGAGGCCTCAGCCTTC 2607
Query 42599 TTATACATATTCCAGAT 42615
|| ||||| | ||||||
Sbjct 2608 TTGTACATCTGCCAGAT 2624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671053336128600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |