Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3410 159 5e-34 seq2519 159 5e-34 >seq3410 Length=4507 Score = 159 bits (176), Expect = 5e-34 Identities = 349/518 (67%), Gaps = 31/518 (6%) Strand=Plus/Minus Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | ||| ||||||||||| | |||| | |||||| | || || || Sbjct 2235 ACAGTTCCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA 2176 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 ||||| | |||| | | ||||| || ||||||||||| ||||| |||||||| ||| Sbjct 2175 TCTTCATTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGT 2116 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || ||| ||||||| |||||||||||||| || ||||||||||| ||||| | Sbjct 2115 GCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCC 2056 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 |||||| | || ||||| || ||||| || ||| ||||| ||| || |||| Sbjct 2055 AACGAGCTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGT----- 2001 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------CAACATTGTA 125642 ||| | || | || | | ||||| | ||||||| || ||| || Sbjct 2000 -ACT---CCCATCTCAAGAACCGCCCCAGC---AAGCAGGTCATTGAGGACATCATCGT- 1949 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 |||||| || | ||| || || ||||| || || ||| || | || | || || Sbjct 1948 --CGATGCGGTCAAGATCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTT 1891 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||||| ||| | ||| ||||||| ||||| || || || || || ||| Sbjct 1890 GGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTG--- 1834 Query 125763 GAGTTG--ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 |||| ||||| || |||| | ||||| | || ||||| || |||||| | Sbjct 1833 --GTTGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGA 1776 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| || || | || ||||||||||| || |||||| Sbjct 1775 ACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 1738 Score = 129 bits (142), Expect = 9e-25 Identities = 205/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| |||||||| | ||| || | |||||| Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 || ||||| || | || ||| | | | | | || || |||| | || || || Sbjct 2564 TCAAAGGATCTCCATGACTGGAACAACAAGATCAAC-GAGGATGAGAAGTACTTCATCTC 2506 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||||||| | |||||||| |||| ||||||||| ||||||||||| || || ||||| | Sbjct 2505 GCACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGA-GC 2447 Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 | ||| || | |||| |||| ||||||||||| ||||| ||||||| Sbjct 2446 GCTTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATCATGA 2387 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 2386 TGGAGAACATTCACTCCGAGACCTACTCCCTGCTCATCGACACCTACAT 2338 >seq2519 Length=5298 Score = 159 bits (176), Expect = 5e-34 Identities = 353/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||| || || || || || || || | ||| ||||| | || ||| Sbjct 2219 CGCTACGTTGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCT 2278 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| ||||| || ||||| | || ||||||| || || || |||| Sbjct 2279 TGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAAGGAGGAGGTC 2338 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040 || || | ||| | ||| ||| |||||| | || ||| | ||||||||| | ||| Sbjct 2339 CGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAG 2398 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 || |||| | |||||| || ||||||||| | || || || || |||| ||| Sbjct 2399 AAGAACGGAG---ACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGCCGACTGC 2455 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAG 97159 | ||||| |||||||||||| ||| | ||||| || |||| | ||| || Sbjct 2456 TACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAACAGATGGGCAAGGGACGCAAG 2515 Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 || | | | || | |||| || ||| | || ||| | ||| ||| |||||||| | Sbjct 2516 ACCA-TGAAGGCTC-AGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCA 2573 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 || | ||| |||||||||||| ||| || ||||| |||||||| || | || | Sbjct 2574 ACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGTA 2633 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 |||| |||| || |||||||| || || | |||||| | |||| |||||| | Sbjct 2634 CCATTCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGACGAGGTCG 2693 Query 97339 CAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | || ||| ||||| ||| || || |||| ||||| || Sbjct 2694 CTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGTTGA 2736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740964390738600