Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq3410 159 5e-34
seq2519 159 5e-34
>seq3410
Length=4507
Score = 159 bits (176), Expect = 5e-34
Identities = 349/518 (67%), Gaps = 31/518 (6%)
Strand=Plus/Minus
Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408
|| || || | ||| ||||||||||| | |||| | |||||| | || || ||
Sbjct 2235 ACAGTTCCCTGTATTCGTAAAAAGGCCGACTGGGCTCTCAAGTGGATTAACGATGAGAAA 2176
Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468
||||| | |||| | | ||||| || ||||||||||| ||||| |||||||| |||
Sbjct 2175 TCTTCATTCGCCCAGCGTCTGGTCGCTTTCGCCGCCGTTGAGGGTATCTTCTTCAGCGGT 2116
Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528
|| ||| ||||||| |||||||||||||| || ||||||||||| ||||| |
Sbjct 2115 GCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCC 2056
Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588
|||||| | || ||||| || ||||| || ||| ||||| ||| || ||||
Sbjct 2055 AACGAGCTCATCTCTCGTGATGAGGGACTCCACACCGACTTCGCCTGCCTGCTGT----- 2001
Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT------CAACATTGTA 125642
||| | || | || | | ||||| | ||||||| || ||| ||
Sbjct 2000 -ACT---CCCATCTCAAGAACCGCCCCAGC---AAGCAGGTCATTGAGGACATCATCGT- 1949
Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702
|||||| || | ||| || || ||||| || || ||| || | || | || ||
Sbjct 1948 --CGATGCGGTCAAGATCGAGCAGGAGTTCCTGACTGAAGCCTTGCCTTGTGCCCTGCTT 1891
Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762
|||||||||| ||| | ||| ||||||| ||||| || || || || || |||
Sbjct 1890 GGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTTCTG--- 1834
Query 125763 GAGTTG--ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817
|||| ||||| || |||| | ||||| | || ||||| || |||||| |
Sbjct 1833 --GTTGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGA 1776
Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||| || || | || ||||||||||| || ||||||
Sbjct 1775 ACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAG 1738
Score = 129 bits (142), Expect = 9e-25
Identities = 205/289 (71%), Gaps = 4/289 (1%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| |||||| ||||||| |||||||| | ||| || | ||||||
Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565
Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|| ||||| || | || ||| | | | | | || || |||| | || || ||
Sbjct 2564 TCAAAGGATCTCCATGACTGGAACAACAAGATCAAC-GAGGATGAGAAGTACTTCATCTC 2506
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196
||||||| | |||||||| |||| ||||||||| ||||||||||| || || ||||| |
Sbjct 2505 GCACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGA-GC 2447
Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256
| ||| || | |||| |||| ||||||||||| ||||| |||||||
Sbjct 2446 GCTTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATCATGA 2387
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
| |||||| | ||||| || | ||||| || || |||| |||||
Sbjct 2386 TGGAGAACATTCACTCCGAGACCTACTCCCTGCTCATCGACACCTACAT 2338
>seq2519
Length=5298
Score = 159 bits (176), Expect = 5e-34
Identities = 353/523 (67%), Gaps = 10/523 (2%)
Strand=Plus/Plus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|| |||||| ||||| || || || || || || || | ||| ||||| | || |||
Sbjct 2219 CGCTACGTTGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACCTTGAGCCT 2278
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| ||||| || ||||| | || ||||||| || || || ||||
Sbjct 2279 TGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAGAATCACGGAAAGGAGGAGGTC 2338
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040
|| || | ||| | ||| ||| |||||| | || ||| | ||||||||| | |||
Sbjct 2339 CGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGAGTCGAG 2398
Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100
|| |||| | |||||| || ||||||||| | || || || || |||| |||
Sbjct 2399 AAGAACGGAG---ACTGGACTCTTATGTGCCCCAATGAGTGCCCGGGCTTGGCCGACTGC 2455
Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAG 97159
| ||||| |||||||||||| ||| | ||||| || |||| | ||| ||
Sbjct 2456 TACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAACAGATGGGCAAGGGACGCAAG 2515
Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218
|| | | | || | |||| || ||| | || ||| | ||| ||| |||||||| |
Sbjct 2516 ACCA-TGAAGGCTC-AGAAGCTCTGGTATGCTATCCTTGAGGCCCAGACCGAGACTGGCA 2573
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278
|| | ||| |||||||||||| ||| || ||||| |||||||| || | || |
Sbjct 2574 ACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGTA 2633
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338
|||| |||| || |||||||| || || | |||||| | |||| |||||| |
Sbjct 2634 CCATTCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACTGCGCTCCTGACGAGGTCG 2693
Query 97339 CAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381
| || ||| ||||| ||| || || |||| ||||| ||
Sbjct 2694 CTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGTTGA 2736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740964390738600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |