Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7566 100 7e-16 seq3410 89.7 1e-12 >seq7566 Length=2327 Score = 100 bits (110), Expect = 7e-16 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 1433 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCR 1374 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || || || || || ||||| ||||| | || Sbjct 1373 GCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 1314 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| || || ||||||||||| || || || Sbjct 1313 ACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 1254 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1253 TTCACGAAGATCTGCAT 1237 >seq3410 Length=4507 Score = 89.7 bits (98), Expect = 1e-12 Identities = 181/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Minus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || ||| ||||||||| |||| | || ||||||||||| | || ||| | |||||| Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565 Query 268793 TCTTATGA-CTTAATAGATTGGAAAAATTTAAAACCA--GAAGA-AAGAAG--ATTTATA 268846 || | || || || || ||||| || || | || || || ||||| || || Sbjct 2564 TCAAAGGATCTCCAT-GACTGGAACAA--CAAGATCAACGAGGATGAGAAGTACTTCATC 2508 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || | ||||| || || || || | ||||| ||||| ||||| || || || ||| Sbjct 2507 TCGCACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGAG 2448 Query 268907 AAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966 ||| | || |||||| |||| || |||||||| |||||||| |||||||| Sbjct 2447 CGCTTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATCATG 2388 Query 268967 ATAGAAAATATTCATTCAGAGA 268988 || || || ||||| || |||| Sbjct 2387 ATGGAGAACATTCACTCCGAGA 2366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151247410291380