Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 100 7e-16
seq3410 89.7 1e-12
>seq7566
Length=2327
Score = 100 bits (110), Expect = 7e-16
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || | ||||| || || || || ||
Sbjct 1433 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCR 1374
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||| || || || || || || || || ||||| ||||| | ||
Sbjct 1373 GCGAAGATCAARCGCTGCTGGTCGGGRGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 1314
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| || || ||||||||||| || || ||
Sbjct 1313 ACATTGTCGATGGTGTCGGARGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 1254
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 1253 TTCACGAAGATCTGCAT 1237
>seq3410
Length=4507
Score = 89.7 bits (98), Expect = 1e-12
Identities = 181/262 (69%), Gaps = 9/262 (3%)
Strand=Plus/Minus
Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792
|| ||| ||||||||| |||| | || ||||||||||| | || ||| | ||||||
Sbjct 2624 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTTTGGACAGCCGAGGAAATTGATCTG 2565
Query 268793 TCTTATGA-CTTAATAGATTGGAAAAATTTAAAACCA--GAAGA-AAGAAG--ATTTATA 268846
|| | || || || || ||||| || || | || || || ||||| || ||
Sbjct 2564 TCAAAGGATCTCCAT-GACTGGAACAA--CAAGATCAACGAGGATGAGAAGTACTTCATC 2508
Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906
|| | ||||| || || || || | ||||| ||||| ||||| || || || |||
Sbjct 2507 TCGCACATTCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTTGAG 2448
Query 268907 AAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCT 268966
||| | || |||||| |||| || |||||||| |||||||| ||||||||
Sbjct 2447 CGCTTCAGCGGCGAAGTACAGGTTCCCGAGGCCAGATGCTTTTACGGCTTCCAGATCATG 2388
Query 268967 ATAGAAAATATTCATTCAGAGA 268988
|| || || ||||| || ||||
Sbjct 2387 ATGGAGAACATTCACTCCGAGA 2366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151247410291380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |