Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq1577 105 6e-18
>seq1577
Length=6503
Score = 105 bits (116), Expect = 6e-18
Identities = 175/253 (69%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||||||| ||||| ||||| ||||| | | | || || || ||| |||||
Sbjct 1832 ACGCCCGTGCTGCCGAAGCCGCCAGCGCCGCGCACGCTCTCTTCGAGCTCCGCAACCTCG 1891
Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620
| | |||||| ||||||| || ||||| || | |||||||||
Sbjct 1892 ACGATCTCGGGGGTGAATATGCGCTCGACGACGAGCTGGGCGACGCGGTCGCCCTCGGCA 1951
Query 5621 ACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680
|| ||||||||| || | | |||||| || | || || | |||||||||||||
Sbjct 1952 ACTTCGAAATCGGCGTCGGCATGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCG 2011
Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740
||||| || || || |||||| |||||| |||| |||| | || || |||||||||||
Sbjct 2012 GCGTCGATGACACCGGCGCCCGTGTCGATAAAGTTCTTGGCAGCGAGACCGGAGCGGGGG 2071
Query 5741 GCCACGCGGCCGT 5753
|| | ||||||||
Sbjct 2072 GCGATGCGGCCGT 2084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430000755417320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |