Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1577 105 6e-18 >seq1577 Length=6503 Score = 105 bits (116), Expect = 6e-18 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||| ||||| ||||| ||||| | | | || || || ||| ||||| Sbjct 1832 ACGCCCGTGCTGCCGAAGCCGCCAGCGCCGCGCACGCTCTCTTCGAGCTCCGCAACCTCG 1891 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | | |||||| ||||||| || ||||| || | ||||||||| Sbjct 1892 ACGATCTCGGGGGTGAATATGCGCTCGACGACGAGCTGGGCGACGCGGTCGCCCTCGGCA 1951 Query 5621 ACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 || ||||||||| || | | |||||| || | || || | ||||||||||||| Sbjct 1952 ACTTCGAAATCGGCGTCGGCATGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCG 2011 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 ||||| || || || |||||| |||||| |||| |||| | || || ||||||||||| Sbjct 2012 GCGTCGATGACACCGGCGCCCGTGTCGATAAAGTTCTTGGCAGCGAGACCGGAGCGGGGG 2071 Query 5741 GCCACGCGGCCGT 5753 || | |||||||| Sbjct 2072 GCGATGCGGCCGT 2084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430000755417320