Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 84.2 1e-11
>seq3288
Length=4615
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 25782 GTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCC-ATCTT 25840
|||||| || ||||||| |||||| ||||| |||||||| || || ||||| || ||||
Sbjct 785 GTACTCGGCGCCGAAATGCCTCCATTGGAAGCCGTACACGGGGCCGAGGTCGCCGATCT- 727
Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900
| | |||| | ||| | || | || || | || || ||| ||||||||||||
Sbjct 726 CGCGGTGCGTGAGGCCGACGCTGTCTAGGAACTCCCGCGAGCCGTTGCCGTCCCAGATCT 667
Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 25960
| || ||| |||| || | ||| |||| ||| || ||||||||||||||
Sbjct 666 TGACGCCCGCCTCGCTCAGGGCGAGAGAGGATGTGTTGCCTTCGATGAACCACAGCAGCT 607
Query 25961 CCGCCGTGACGGC 25973
| || |||||||
Sbjct 606 CGGCGATGACGGC 594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340095171554655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |