Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1269 100 4e-17 seq1179 98.7 2e-16 >seq1269 Length=7036 Score = 100 bits (110), Expect = 4e-17 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| | | || || |||||||| || ||||||||||| |||| Sbjct 2034 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 1976 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | || ||||| ||||||||||| || ||||||||| |||||| Sbjct 1975 TTCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 1934 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| | ||| ||||||| || ||||| | ||| | Sbjct 1869 TGATCTACGAGGAGACCCGCGGTGTCCTCAAGTCCTTCCTCGAGGGTGTTATTCGTGACG 1810 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || |||||||||||||| ||||| | ||||| | Sbjct 1809 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCTCTGGATGTTGTCTACG 1750 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | || || || ||||| | | || ||||| || ||||| Sbjct 1749 CACTCAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 1706 >seq1179 Length=16434 Score = 98.7 bits (108), Expect = 2e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 || ||||||| |||| ||| | ||| |||||| || || |||| || ||| || Sbjct 801 TACGAAGAGACCCGTGGTGTCCTCAAGTCATTCCTCGAGGGTGTCATCCGCGACGCTGTC 742 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||| ||||||||||| || || ||||||||||||||| ||||| | ||||| || || Sbjct 741 ACCTACACCGAGCACGCCAAGCGCAAGACTGTCACCTCCCTGGATGTTGTCTACGCGCTG 682 Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||||||| | | || ||||| || Sbjct 681 AAGCGTCAAGGCCGCACCCTGTACGGTTTCGG 650 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| | | || || ||||| || || ||||||||||| ||||| Sbjct 965 GCCAAGCGCCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATCACCAAGCCCGCTAT 907 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| || ||||||||||| ||||||||| |||||| Sbjct 906 CCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065842067855