Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1269 100 4e-17
seq1179 98.7 2e-16
>seq1269
Length=7036
Score = 100 bits (110), Expect = 4e-17
Identities = 85/102 (83%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||
Sbjct 2034 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 1976
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
| || ||||| ||||||||||| || ||||||||| ||||||
Sbjct 1975 TTCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 1934
Score = 84.2 bits (92), Expect = 3e-12
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | ||| | ||| ||||||| || ||||| | ||| |
Sbjct 1869 TGATCTACGAGGAGACCCGCGGTGTCCTCAAGTCCTTCCTCGAGGGTGTTATTCGTGACG 1810
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || |||||||| || || |||||||||||||| ||||| | ||||| |
Sbjct 1809 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCTCTGGATGTTGTCTACG 1750
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | || || || ||||| | | || ||||| || |||||
Sbjct 1749 CACTCAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 1706
>seq1179
Length=16434
Score = 98.7 bits (108), Expect = 2e-16
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600
|| ||||||| |||| ||| | ||| |||||| || || |||| || ||| ||
Sbjct 801 TACGAAGAGACCCGTGGTGTCCTCAAGTCATTCCTCGAGGGTGTCATCCGCGACGCTGTC 742
Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660
||| ||||||||||| || || ||||||||||||||| ||||| | ||||| || ||
Sbjct 741 ACCTACACCGAGCACGCCAAGCGCAAGACTGTCACCTCCCTGGATGTTGTCTACGCGCTG 682
Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| ||||||||||| | | || ||||| ||
Sbjct 681 AAGCGTCAAGGCCGCACCCTGTACGGTTTCGG 650
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||| | | || || ||||| || || ||||||||||| |||||
Sbjct 965 GCCAAGCGCCACCGCAAGATTT-TGCGTGACAACATTCAGGGTATCACCAAGCCCGCTAT 907
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| || ||||||||||| ||||||||| ||||||
Sbjct 906 CCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79065842067855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |