Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 96.9 3e-15
>seq2519
Length=5298
Score = 96.9 bits (106), Expect = 3e-15
Identities = 410/638 (64%), Gaps = 15/638 (2%)
Strand=Plus/Minus
Query 148251 TCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACAC 148310
||||| || || || | | |||| || || | ||| ||||| ||| || || || |||
Sbjct 2493 TCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCAC 2434
Query 148311 TCGTCGGGGCACATCAATGACCATT-TCCCTCCTGTCTTTACCCTCTTCATAAACAGATC 148369
|| | ||||||||| | | ||| | ||| | || ||| || |||||||| || |||||
Sbjct 2433 TCATTGGGGCACATAAGAGTCCAGTCTCCGTTCT-TCTCGACTCTCTTCATGAAGAGATC 2375
Query 148370 AGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCCATATT--- 148426
|| |||| | ||||| || || || ||||| | ||||| || |||
Sbjct 2374 GGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTT 2315
Query 148427 GCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGTCAT 148486
|||| |||||||| || || ||||| |||||||||||||| | ||| | || |
Sbjct 2314 GCGC---AGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAA 2258
Query 148487 GGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCATGCTATTAAAAACACG 148543
||| || | | ||||| || || || || | ||| | || | || || |||||
Sbjct 2257 GGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACG 2198
Query 148544 CAATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTTACTATTGGTGGC 148603
| ||| | | || | || || || ||| |||| | |||||
Sbjct 2197 AAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGC 2138
Query 148604 GCGAATTTGAGTG-ACATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAAT 148662
||||| | ||| |||||||||||||| || || | || || |||||||| |||
Sbjct 2137 ACGAATGCG-GTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAG 2079
Query 148663 CGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGGTAGCACG 148722
||||| || | |||||| || | || || || | |||| | ||| |||| |
Sbjct 2078 TCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGG 2019
Query 148723 ATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGACTAGCGTGAGTGAACA 148782
| || | || | | | | |||| || || || ||| ||||| ||||| |
Sbjct 2018 AGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGA 1959
Query 148783 GCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATGTCATCACCATGAATC 148841
| |||| | |||||| | |||| |||||| ||| || | ||| ||||| ||
Sbjct 1958 AC-TTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATG 1900
Query 148842 TGTAGAGCTACACGCATCAGCATGTGTTGAGGCCTCTC 148879
| || |||||||| | ||||||||| ||||||||
Sbjct 1899 CCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTC 1862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478601161129200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |