Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2519 96.9 3e-15 >seq2519 Length=5298 Score = 96.9 bits (106), Expect = 3e-15 Identities = 410/638 (64%), Gaps = 15/638 (2%) Strand=Plus/Minus Query 148251 TCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACAC 148310 ||||| || || || | | |||| || || | ||| ||||| ||| || || || ||| Sbjct 2493 TCGTACTTCTCATACAAGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCAC 2434 Query 148311 TCGTCGGGGCACATCAATGACCATT-TCCCTCCTGTCTTTACCCTCTTCATAAACAGATC 148369 || | ||||||||| | | ||| | ||| | || ||| || |||||||| || ||||| Sbjct 2433 TCATTGGGGCACATAAGAGTCCAGTCTCCGTTCT-TCTCGACTCTCTTCATGAAGAGATC 2375 Query 148370 AGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCCATATT--- 148426 || |||| | ||||| || || || ||||| | ||||| || ||| Sbjct 2374 GGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTT 2315 Query 148427 GCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGTCAT 148486 |||| |||||||| || || ||||| |||||||||||||| | ||| | || | Sbjct 2314 GCGC---AGATCCAAGAAGTCGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAA 2258 Query 148487 GGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCATGCTATTAAAAACACG 148543 ||| || | | ||||| || || || || | ||| | || | || || ||||| Sbjct 2257 GGCACCGGGACGCTTGTTACCACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACG 2198 Query 148544 CAATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTTACTATTGGTGGC 148603 | ||| | | || | || || || ||| |||| | ||||| Sbjct 2197 AAGCATAGGGACAACGCCATTGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGC 2138 Query 148604 GCGAATTTGAGTG-ACATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAAT 148662 ||||| | ||| |||||||||||||| || || | || || |||||||| ||| Sbjct 2137 ACGAATGCG-GTGAACATTCAGGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAG 2079 Query 148663 CGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGGTAGCACG 148722 ||||| || | |||||| || | || || || | |||| | ||| |||| | Sbjct 2078 TCTTGAGGGTGTCATAGATACCCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGG 2019 Query 148723 ATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGACTAGCGTGAGTGAACA 148782 | || | || | | | | |||| || || || ||| ||||| ||||| | Sbjct 2018 AGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGA 1959 Query 148783 GCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATGTCATCACCATGAATC 148841 | |||| | |||||| | |||| |||||| ||| || | ||| ||||| || Sbjct 1958 AC-TTGCTGGACATCAAGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATG 1900 Query 148842 TGTAGAGCTACACGCATCAGCATGTGTTGAGGCCTCTC 148879 | || |||||||| | ||||||||| |||||||| Sbjct 1899 CCAACGGCGACACGCATGATCATGTGTTGCGGCCTCTC 1862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478601161129200