Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 398 2e-105
>seq2519
Length=5298
Score = 398 bits (440), Expect = 2e-105
Identities = 1081/1629 (66%), Gaps = 32/1629 (2%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
|||||||||||| | || ||| | | ||| ||||| || | | | ||| | || ||
Sbjct 1961 TTCACGCACGCCTCTCCCACACTCTTCAACGCTGGTACCCCACAGGCCCAGCTATCCTCC 2020
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| ||||||||||||||||||| |||||| || |||| |
Sbjct 2021 TGCTTCCTCGTCGACATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAGACT 2080
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724
|| || | || ||||||| || || || || || || || | ||| ||||||
Sbjct 2081 TGCGCCATGATCTCCAAGATGGCCGGTGGTATCGGCCTGAATG--TTCACCGCATTCGTG 2138
Query 363725 C-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783
| || | | |||||| |||||| || ||| ||||| | || || ||||||
Sbjct 2139 CCACTGG-CTCCTACATTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTT 2197
Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843
||||| || |||| || || | ||||| ||||||||||| ||||| || ||
Sbjct 2198 CGTGTCTTCAACAACACGGCTCGCTACGTTGACCAGGGTGGTAACAAGCGTCCCGGTGCC 2257
Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903
||||| || || || |||||| || ||||| | || || || | || || || ||
Sbjct 2258 TTTGCCATCTACCTTGAGCCTTGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAG 2317
Query 363904 AA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962
|| ||||| ||| ||||| | || || ||||| || || ||| || ||| || | ||
Sbjct 2318 AATCACGG-AAAGGAGGAGGTCCGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGA 2376
Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAAT 364021
| || |||||| | || ||| || || | ||| | || | ||||| | || |
Sbjct 2377 TCTCTTCATGAAGAGAGTCGAGA-AGAACGGAGACTGGACTCTTATGTGCCCCAATGAGT 2435
Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081
| || || | |||| | || || || | || || | || || ||||| |||
Sbjct 2436 GCCCGGGCTTGGCCGACTGCTACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAAC 2495
Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141
| ||| |||| || ||||| || || |||||||| |||| ||| ||| | ||
Sbjct 2496 AGATGGGCAAGGGACGCAAGACCATGAAGGCTCAGAAGCTCTGGTATGCTATCCTTGAGG 2555
Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201
| |||| ||||| || | |||| ||| | ||||| ||| | |||||||||| ||
Sbjct 2556 CCCAGACCGAGACTGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCA 2615
Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260
||||| || |||||||||| |||| |||| | ||||| || || ||||| ||||| |||
Sbjct 2616 ACCAGAAGAACCTTGGTACCATTC-GCAGCTCTAACCTGTGCACTGAGATCATTGAGTAC 2674
Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320
|||||| |||||| || || || ||||| || ||| |||| ||||| | |||||
Sbjct 2675 TGCGCTCCTGACGAGGTCGCTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGTT 2734
Query 364321 ------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374
|| || ||| | ||| |||| | || | || || ||| | || | |
Sbjct 2735 GACTACAACGAGGGTGTCTACGACTTCCAGAAGCTCCACGAGGTGACCCAGGTTGTTGTT 2794
Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG-AGCGTT 364432
|||| || ||| | |||||| || |||| || ||| || || || | | |
Sbjct 2795 CGCAACCTGAACAGAATCATCGACGTCAACCATTACCCCGTTCAAGAGGCTCGCAACAGT 2854
Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492
|| ||||| || ||||| ||||| || ||||| ||||| || || || | ||| ||
Sbjct 2855 --AACATGCGCCACCGCCCCATTGGCCTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTGG 2912
Query 364493 TGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAA 364552
|| ||| | || || || || || || || | || || ||| ||||||| || |
Sbjct 2913 CTCTTCGCATGCCCTTCGAGTCTCCCGAAGCCCGCGACCTCAACAAGAAGATCTTCGAGA 2972
Query 364553 CAATGTATTTTGCCGCAATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTAC 364611
| || || || || | || || |||| | |||| ||| |||| |||
Sbjct 2973 CCATCTACCACGCTGCCCTCACCATGTC-TGTGCAGCTGGCTAAAGAGGAGGGCCCATAC 3031
Query 364612 TCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671
|| || ||||| || ||| | || ||||| | | |||| ||| | |||||||||
Sbjct 3032 CAGACGTACGAGGGCTCGCCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGGAATGTC 3091
Query 364672 ACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTAC 364730
| ||| || | || ||| ||||||| | || | | || | ||| |||| |||
Sbjct 3092 AAGCCTTCGGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGA-TCAAGCAGCACGGTGT 3150
Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790
|||||||| || | ||||||||||| || || ||| | |||||| | || ||
Sbjct 3151 CCGCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAA 3210
Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850
||||||||| || || || | || || | || ||||| || ||| | || ||
Sbjct 3211 CAACGAGTGTTTTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGA 3270
Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910
|| | ||| || || | || | ||||| ||| |||| || || ||| ||
Sbjct 3271 GTTCCAGGTCGTCAACCCTTGGCTTCTTAAGGACCTTGTCGACATGGGCCTATGGTCCGA 3330
Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT-CCAGGATTTC 364969
|||||||||| ||||||||||| || ||||| | ||||||||| ||| || |
Sbjct 3331 TGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCAATTCAGAACATTCCCAACATCCC 3390
Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG 365029
|| ||| | ||| || | ||||| ||||| |||||||| ||| ||| ||| || ||
Sbjct 3391 CA-CAGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACTGTCGTTC 3449
Query 365030 ATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT--CAT 365087
| ||||| |||||||| ||||| || || |||| |||||| | || |||| |||
Sbjct 3450 AGATGGCTGCCGATCGTGGTGCCTTCATTGATCAGTCGCAGTCGCTCAA--TATTCACAT 3507
Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147
|| | || || | |||| | || |||||| ||| ||| ||||| ||||||
Sbjct 3508 GAAGGATCCCACTATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCT 3567
Query 365148 TAAGACAGG 365156
||||| ||
Sbjct 3568 CAAGACGGG 3576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303182683503770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |