Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2519 398 2e-105 >seq2519 Length=5298 Score = 398 bits (440), Expect = 2e-105 Identities = 1081/1629 (66%), Gaps = 32/1629 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||| | || ||| | | ||| ||||| || | | | ||| | || || Sbjct 1961 TTCACGCACGCCTCTCCCACACTCTTCAACGCTGGTACCCCACAGGCCCAGCTATCCTCC 2020 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| ||||||||||||||||||| |||||| || |||| | Sbjct 2021 TGCTTCCTCGTCGACATGAAGGAAGATTCCATCGAGGGTATCTATGACACCCTCAAGACT 2080 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 || || | || ||||||| || || || || || || || | ||| |||||| Sbjct 2081 TGCGCCATGATCTCCAAGATGGCCGGTGGTATCGGCCTGAATG--TTCACCGCATTCGTG 2138 Query 363725 C-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | || | | |||||| |||||| || ||| ||||| | || || |||||| Sbjct 2139 CCACTGG-CTCCTACATTGCCGGCACCAATGGTACCTCCAATGGCGTTGTCCCTATGCTT 2197 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| || |||| || || | ||||| ||||||||||| ||||| || || Sbjct 2198 CGTGTCTTCAACAACACGGCTCGCTACGTTGACCAGGGTGGTAACAAGCGTCCCGGTGCC 2257 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || || |||||| || ||||| | || || || | || || || || Sbjct 2258 TTTGCCATCTACCTTGAGCCTTGGCACGCCGACGTCTTCGACTTCTTGGATCTGCGCAAG 2317 Query 363904 AA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 || ||||| ||| ||||| | || || ||||| || || ||| || ||| || | || Sbjct 2318 AATCACGG-AAAGGAGGAGGTCCGCGCTCGTGACCTCTTTCTTGCCCTCTGGATTCCCGA 2376 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAAT 364021 | || |||||| | || ||| || || | ||| | || | ||||| | || | Sbjct 2377 TCTCTTCATGAAGAGAGTCGAGA-AGAACGGAGACTGGACTCTTATGTGCCCCAATGAGT 2435 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || | |||| | || || || | || || | || || ||||| ||| Sbjct 2436 GCCCGGGCTTGGCCGACTGCTACGGCGAGGAGTTTGAGGCCTTGTATGAGAAGTACGAAC 2495 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | ||| |||| || ||||| || || |||||||| |||| ||| ||| | || Sbjct 2496 AGATGGGCAAGGGACGCAAGACCATGAAGGCTCAGAAGCTCTGGTATGCTATCCTTGAGG 2555 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| ||||| || | |||| ||| | ||||| ||| | |||||||||| || Sbjct 2556 CCCAGACCGAGACTGGCAACCCCTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCA 2615 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||||||||| |||| |||| | ||||| || || ||||| ||||| ||| Sbjct 2616 ACCAGAAGAACCTTGGTACCATTC-GCAGCTCTAACCTGTGCACTGAGATCATTGAGTAC 2674 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 |||||| |||||| || || || ||||| || ||| |||| ||||| | ||||| Sbjct 2675 TGCGCTCCTGACGAGGTCGCTGTCTGCAACCTGGCCTCGCTCGCACTTCCCACTTTTGTT 2734 Query 364321 ------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374 || || ||| | ||| |||| | || | || || ||| | || | | Sbjct 2735 GACTACAACGAGGGTGTCTACGACTTCCAGAAGCTCCACGAGGTGACCCAGGTTGTTGTT 2794 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG-AGCGTT 364432 |||| || ||| | |||||| || |||| || ||| || || || | | | Sbjct 2795 CGCAACCTGAACAGAATCATCGACGTCAACCATTACCCCGTTCAAGAGGCTCGCAACAGT 2854 Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492 || ||||| || ||||| ||||| || ||||| ||||| || || || | ||| || Sbjct 2855 --AACATGCGCCACCGCCCCATTGGCCTCGGTGTGCAGGGTCTTGCCGATGCTTTCCTGG 2912 Query 364493 TGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAA 364552 || ||| | || || || || || || || | || || ||| ||||||| || | Sbjct 2913 CTCTTCGCATGCCCTTCGAGTCTCCCGAAGCCCGCGACCTCAACAAGAAGATCTTCGAGA 2972 Query 364553 CAATGTATTTTGCCGCAATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTAC 364611 | || || || || | || || |||| | |||| ||| |||| ||| Sbjct 2973 CCATCTACCACGCTGCCCTCACCATGTC-TGTGCAGCTGGCTAAAGAGGAGGGCCCATAC 3031 Query 364612 TCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTC 364671 || || ||||| || ||| | || ||||| | | |||| ||| | ||||||||| Sbjct 3032 CAGACGTACGAGGGCTCGCCTGTCTCCCAGGGCATCCTTCAGTATGACATGTGGAATGTC 3091 Query 364672 ACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTAC 364730 | ||| || | || ||| ||||||| | || | | || | ||| |||| ||| Sbjct 3092 AAGCCTTCGGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGA-TCAAGCAGCACGGTGT 3150 Query 364731 TCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAA 364790 |||||||| || | ||||||||||| || || ||| | |||||| | || || Sbjct 3151 CCGCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACTTCGCAGATCTTGGGCAA 3210 Query 364791 CAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGA 364850 ||||||||| || || || | || || | || ||||| || ||| | || || Sbjct 3211 CAACGAGTGTTTTGAGCCCTACACCTCAAACATCTACCAGCGCCGTGTCCTTGCTGGCGA 3270 Query 364851 ATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGA 364910 || | ||| || || | || | ||||| ||| |||| || || ||| || Sbjct 3271 GTTCCAGGTCGTCAACCCTTGGCTTCTTAAGGACCTTGTCGACATGGGCCTATGGTCCGA 3330 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT-CCAGGATTTC 364969 |||||||||| ||||||||||| || ||||| | ||||||||| ||| || | Sbjct 3331 TGCCATGAAGAACCGTATCATCGCCGAGAACGGTTCAATTCAGAACATTCCCAACATCCC 3390 Query 364970 CAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG 365029 || ||| | ||| || | ||||| ||||| |||||||| ||| ||| ||| || || Sbjct 3391 CA-CAGAGGTCAAGGCTCTGTACAAGACCGTTTGGGAAATCTCCCAGCGTACTGTCGTTC 3449 Query 365030 ATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT--CAT 365087 | ||||| |||||||| ||||| || || |||| |||||| | || |||| ||| Sbjct 3450 AGATGGCTGCCGATCGTGGTGCCTTCATTGATCAGTCGCAGTCGCTCAA--TATTCACAT 3507 Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147 || | || || | |||| | || |||||| ||| ||| ||||| |||||| Sbjct 3508 GAAGGATCCCACTATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCT 3567 Query 365148 TAAGACAGG 365156 ||||| || Sbjct 3568 CAAGACGGG 3576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303182683503770