Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2519 190 2e-43 seq7566 140 3e-28 seq1878 118 1e-21 seq1773 114 1e-20 >seq2519 Length=5298 Score = 190 bits (210), Expect = 2e-43 Identities = 958/1501 (64%), Gaps = 43/1501 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||| || | ||||| ||| || | ||| || ||| |||| Sbjct 3285 TTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGC 3226 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 |||||| ||||||| ||||||| ||| || | || | || || |||||| ||| || Sbjct 3225 TCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACG 3166 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | ||||||| |||||| | ||||| || | |||| ||||| Sbjct 3165 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAG 3106 Query 145238 AG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || |||| ||| | || | ||||||||| ||||| | ||||||| | | | || Sbjct 3105 AGGTCCGAA---GGCTTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGC 3049 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 ||| | | | ||| |||| ||| || |||| || || | | || Sbjct 3048 GAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCT-GC-ACAGACATGGTGA 2991 Query 145355 GCGC--CGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 | || || || || |||||| || | | ||||||| ||||| || Sbjct 2990 GGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACT 2931 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 || | |||||||| || | ||||||||||| || ||||| | || | ||| |||| Sbjct 2930 CGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGG 2871 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAA 145532 | || || |||||| || | | ||| | | || || | || |||||| | Sbjct 2870 GGCGGTGGCGCATGTTACTGTTGCGAGCCTCTTGAACGGGGTAATGGTTGACGTCGATGA 2811 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592 || | |||| ||| || || || |||| || | | | | ||| | ||||| | Sbjct 2810 TTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAGA 2751 Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 | |||||| | | ||| | | | |||| ||| |||| || || || || Sbjct 2750 CACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGA 2691 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGG 145709 ||| || | ||| ||| | | |||||| | ||||| || ||| | |||| Sbjct 2690 CCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGC---GAATGG 2634 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 | || || || | ||| || || || | |||| || ||||||||||||||| | || Sbjct 2633 TACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGT 2574 Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCT 145826 ||||||||| ||| | ||| | ||| | | | | || | ||| || || | Sbjct 2573 TGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGC---TTCTGAGCCTTCA--T 2519 Query 145827 GCTGCTG-GTAGC-GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 | | || || | |||| | |||||| ||| || | |||||||| | || Sbjct 2518 GGTCTTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCC 2459 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||||| |||| || ||| || |||| ||||| ||||| || | ||| | ||||| Sbjct 2458 GTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTT 2399 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004 | ||| | || ||| || | ||| || | ||| || || | | ||| || || Sbjct 2398 CTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCG 2339 Query 146005 GCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATGTCCGCGTG 146061 | ||||| || || ||| || || || ||| | | | ||| ||| ||||| Sbjct 2338 GACCTCCTC-CTTTCCGTGATTCTTGC-GCAGATCCAAGAAGTCGA-AGACGTCGGCGTG 2282 Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTG 146118 ||| || |||| |||| ||| | ||| || || ||| ||||||||||| |||| Sbjct 2281 CCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTA 2222 Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT 146178 || || ||||||| ||||| || | ||| || | ||||| ||| || || || Sbjct 2221 GCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGT 2162 Query 146179 AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCC 146238 | || || ||| || || | || |||||||||| ||||| ||| ||| | Sbjct 2161 GCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGC 2102 Query 146239 GTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC-- 146295 |||||| || ||||| |||| ||| || || ||||| || || ||| ||| Sbjct 2101 CATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCGATGGAATCTT 2043 Query 146296 GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAA 146355 |||| ||| ||| || ||||| ||| | | ||| ||| || || || || ||| Sbjct 2042 CCTTC--ATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAA 1985 Query 146356 CAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415 | || || |||||||| || | || | | ||||| || |||||||| | Sbjct 1984 GAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGAC 1925 Query 146416 GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCG 146475 | | || |||||| || ||||| | ||||| ||||||| ||||||||| |||| Sbjct 1924 GCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCT 1865 Query 146476 CTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGA 146534 ||| || | |||| ||||| ||| | | || |||||| ||||||| | |||| Sbjct 1864 CTCAGCGATCTTG-CCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGAAGCCGA 1806 Query 146535 A 146535 | Sbjct 1805 A 1805 >seq7566 Length=2327 Score = 140 bits (154), Expect = 3e-28 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACC 1284 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || ||||| || || || || ||||| |||||||||| Sbjct 1283 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGA 1235 >seq1878 Length=6026 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||| || || | || | ||||||||||| || |||||||| || || Sbjct 5705 GCCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 5764 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| || |||||||| ||| |||| |||||||||||||| ||||| Sbjct 5765 CAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGG 5824 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| || ||| | | || | || || | ||||| | Sbjct 5825 GATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCAC 5884 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| | || || ||||| |||||||| Sbjct 5885 CTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932 >seq1773 Length=6176 Score = 114 bits (126), Expect = 1e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| ||| | |||||| |||||| ||||||||||| || ||| Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||||| ||| ||||| || || || || |||| Sbjct 5221 CGATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 5162 Query 131225 AA 131226 || Sbjct 5161 AA 5160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471952411862400