Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 190 2e-43
seq7566 140 3e-28
seq1878 118 1e-21
seq1773 114 1e-20
>seq2519
Length=5298
Score = 190 bits (210), Expect = 2e-43
Identities = 958/1501 (64%), Gaps = 43/1501 (3%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||||||||| |||||||| || | ||||| ||| || | ||| || ||| ||||
Sbjct 3285 TTGACGACCTGGAACTCGCCAGCAAGGACACGGCGCTGGTAGATGTTTGAGGTGTAGGGC 3226
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|||||| ||||||| ||||||| ||| || | || | || || |||||| ||| ||
Sbjct 3225 TCAAAACACTCGTTGTTGCCCAAGATCTGCGAAGTGCTGGCAGTCGGCATGGGCGCGACG 3166
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| | || ||||| | ||||||| |||||| | ||||| || | |||| |||||
Sbjct 3165 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAG 3106
Query 145238 AG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294
|| |||| ||| | || | ||||||||| ||||| | ||||||| | | | ||
Sbjct 3105 AGGTCCGAA---GGCTTGACATTCCACATGTCATACTGAAGGATGCCCTGGGAGACAGGC 3049
Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354
||| | | | ||| |||| ||| || |||| || || | | ||
Sbjct 3048 GAGCCCTCGTACGTCTGGTATGGGCCCTCCTCTTTAGCCAGCT-GC-ACAGACATGGTGA 2991
Query 145355 GCGC--CGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412
| || || || || |||||| || | | ||||||| ||||| ||
Sbjct 2990 GGGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAGGTCGCGGGCTTCGGGAGACT 2931
Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472
|| | |||||||| || | ||||||||||| || ||||| | || | ||| ||||
Sbjct 2930 CGAAGGGCATGCGAAGAGCCAGGAAAGCATCGGCAAGACCCTGCACACCGAGGCCAATGG 2871
Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAA 145532
| || || |||||| || | | ||| | | || || | || |||||| |
Sbjct 2870 GGCGGTGGCGCATGTTACTGTTGCGAGCCTCTTGAACGGGGTAATGGTTGACGTCGATGA 2811
Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592
|| | |||| ||| || || || |||| || | | | | ||| | ||||| |
Sbjct 2810 TTCTGTTCAGGTTGCGAACAACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAGA 2751
Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652
| |||||| | | ||| | | | |||| ||| |||| || || || ||
Sbjct 2750 CACCCTCGTTGTAGTCAACAAAAGTGGGAAGTGCGAGCGAGGCCAGGTTGCAGACAGCGA 2691
Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGG 145709
||| || | ||| ||| | | |||||| | ||||| || ||| | ||||
Sbjct 2690 CCTCGTCAGGAGCGCAGTACTCAATGATCTCAGTGCACAGGTTAGAGCTGC---GAATGG 2634
Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769
| || || || | ||| || || || | |||| || ||||||||||||||| | ||
Sbjct 2633 TACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAGGGGT 2574
Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCT 145826
||||||||| ||| | ||| | ||| | | | | || | ||| || || |
Sbjct 2573 TGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGAGC---TTCTGAGCCTTCA--T 2519
Query 145827 GCTGCTG-GTAGC-GGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884
| | || || | |||| | |||||| ||| || | |||||||| | ||
Sbjct 2518 GGTCTTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACAAGGCCTCAAACTCCTCGCC 2459
Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944
|||||| |||| || ||| || |||| ||||| ||||| || | ||| | |||||
Sbjct 2458 GTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAAGAGTCCAGTCTCCGTTCTT 2399
Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004
| ||| | || ||| || | ||| || | ||| || || | | ||| || ||
Sbjct 2398 CTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGAAAGAGGTCACGAGCGCG 2339
Query 146005 GCAATCCTCAGCACCCATGTTTC--GCTTCAAAT-TAAGCACACTATAGATGTCCGCGTG 146061
| ||||| || || ||| || || || ||| | | | ||| ||| |||||
Sbjct 2338 GACCTCCTC-CTTTCCGTGATTCTTGC-GCAGATCCAAGAAGTCGA-AGACGTCGGCGTG 2282
Query 146062 CCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTG 146118
||| || |||| |||| ||| | ||| || || ||| ||||||||||| ||||
Sbjct 2281 CCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCAACGTA 2222
Query 146119 ACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT 146178
|| || ||||||| ||||| || | ||| || | ||||| ||| || || ||
Sbjct 2221 GCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCATTGGAGGTACCATTGGT 2162
Query 146179 AGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCC 146238
| || || ||| || || | || |||||||||| ||||| ||| ||| |
Sbjct 2161 GCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCAGGCCGATACCACCGGC 2102
Query 146239 GTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC-- 146295
|||||| || ||||| |||| ||| || || ||||| || || ||| |||
Sbjct 2101 CATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCATAGATACCCTCGATGGAATCTT 2043
Query 146296 GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAA 146355
|||| ||| ||| || ||||| ||| | | ||| ||| || || || || |||
Sbjct 2042 CCTTC--ATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGGTACCAGCGTTGAA 1985
Query 146356 CAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415
| || || |||||||| || | || | | ||||| || |||||||| |
Sbjct 1984 GAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGTAGGTTTCGATGAC 1925
Query 146416 GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCG 146475
| | || |||||| || ||||| | ||||| ||||||| ||||||||| ||||
Sbjct 1924 GCGCTCAACGTCGTCACCCCAGATGCCAACGGCGACACGCATGATCATGTGTTGCGGCCT 1865
Query 146476 CTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGA 146534
||| || | |||| ||||| ||| | | || |||||| ||||||| | ||||
Sbjct 1864 CTCAGCGATCTTG-CCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTTTTGAAGCCGA 1806
Query 146535 A 146535
|
Sbjct 1805 A 1805
>seq7566
Length=2327
Score = 140 bits (154), Expect = 3e-28
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||
Sbjct 1463 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1404
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || |||
Sbjct 1403 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCRGCGAAGATCAARCGCTGCTGGTCGGGRGGG 1344
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 1343 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGARGACTCCACC 1284
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|| | ||| | || ||||| || || || || ||||| ||||||||||
Sbjct 1283 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATGA 1235
>seq1878
Length=6026
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || |||| ||| || || | || | ||||||||||| || |||||||| || ||
Sbjct 5705 GCCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 5764
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| |||||| || |||||||| ||| |||| |||||||||||||| |||||
Sbjct 5765 CAGTGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGG 5824
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || || || || ||| || ||| | | || | || || | ||||| |
Sbjct 5825 GATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCGATCGTGTCCGAAGACTCCAC 5884
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || || ||||| | || || ||||| ||||||||
Sbjct 5885 CTCCAACGTAATTGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 5932
>seq1773
Length=6176
Score = 114 bits (126), Expect = 1e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| ||||||||||| ||| | |||||| |||||| ||||||||||| || |||
Sbjct 5341 CCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCRAAGA 5282
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || ||||| || || ||||| ||| || ||||| | |
Sbjct 5281 TCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 5222
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 5221 CGATSGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 5162
Query 131225 AA 131226
||
Sbjct 5161 AA 5160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471952411862400
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