Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq9619 136 3e-27
seq6095 136 3e-27
seq3602 136 3e-27
seq8289 107 1e-18
>seq9619
Length=1590
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 36 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 95
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 96 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 130
>seq6095
Length=2915
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 776 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 717
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 716 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 682
>seq3602
Length=13378
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 8304 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8245
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 8244 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 8210
>seq8289
Length=2061
Score = 107 bits (118), Expect = 1e-18
Identities = 200/294 (68%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
|||||| ||||| || ||||| ||| | ||| | ||||| ||||||| ||||| ||
Sbjct 570 GGACGCCTTCTATCGTTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 511
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
||| || || |||||| | ||||| || |||||| || | |||| || || |
Sbjct 510 CGGCATCAAGACCGTCGTCGTCAATCTGAGCAGTGTCGCTCAGTCCCTCGCCCGTCCCGG 451
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| |||| | || || || || | ||| || || || ||||| | | || | |
Sbjct 450 CGCCTATGTCATCAAGTACTTTGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 391
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| | ||||| || || || | ||||||||||| ||| || ||
Sbjct 390 CGACGACCGCTGGATCATCAACGGCTCCCACAATGCCGCCAAGCTGCAAGACCACCTCGA 331
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||| || |||||| || || || | | ||| | ||||| ||||||||
Sbjct 330 CGGCTTCATCAACAAGTTCGTTCTTTGCAAGAAGTGCAAGAACCCTGAGACCGA 277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334905419000285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |