Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9619 136 3e-27 seq6095 136 3e-27 seq3602 136 3e-27 seq8289 107 1e-18 >seq9619 Length=1590 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 36 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 95 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 96 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 130 >seq6095 Length=2915 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 776 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 717 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 716 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 682 >seq3602 Length=13378 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8304 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8245 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 8244 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 8210 >seq8289 Length=2061 Score = 107 bits (118), Expect = 1e-18 Identities = 200/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| || ||||| ||| | ||| | ||||| ||||||| ||||| || Sbjct 570 GGACGCCTTCTATCGTTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 511 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || |||||| | ||||| || |||||| || | |||| || || | Sbjct 510 CGGCATCAAGACCGTCGTCGTCAATCTGAGCAGTGTCGCTCAGTCCCTCGCCCGTCCCGG 451 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||| | || || || || | ||| || || || ||||| | | || | | Sbjct 450 CGCCTATGTCATCAAGTACTTTGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 391 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || || | ||||||||||| ||| || || Sbjct 390 CGACGACCGCTGGATCATCAACGGCTCCCACAATGCCGCCAAGCTGCAAGACCACCTCGA 331 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || |||||| || || || | | ||| | ||||| |||||||| Sbjct 330 CGGCTTCATCAACAAGTTCGTTCTTTGCAAGAAGTGCAAGAACCCTGAGACCGA 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334905419000285