Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2519 161 1e-34 >seq2519 Length=5298 Score = 161 bits (178), Expect = 1e-34 Identities = 626/973 (64%), Gaps = 22/973 (2%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62811 || ||||| || || || || ||||| | || | | ||| || | || ||||||||||| Sbjct 2712 GAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTCAGTGCA 2654 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || ||| | ||||| || | || | || || ||||| ||| ||||| Sbjct 2653 CAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 2594 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||| || || ||||| || | ||||| || |||| | || | || || | ||||| Sbjct 2593 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGA- 2535 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC--TCT-TTCGTATAGTGTATACA 62987 | || ||||||| || | ||| || ||| | ||| |||||| ||||| Sbjct 2534 GCTTCTGAGCCTTCATGGTC---TTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACA 2478 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 | || ||||| || || | | | ||| || || || |||| || ||||| | Sbjct 2477 AGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAA 2418 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | ||| ||||||| | || |||| ||||| |||||||| |||||||| || || | Sbjct 2417 GAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAA 2358 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 ||| || || | | | ||||| ||||| |||||| ||||| | ||| Sbjct 2357 GAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGT 2298 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | || | ||||| || || | ||| ||||| | | || || || ||||| | Sbjct 2297 CGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTAC 2238 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | ||||| || | ||| | ||| ||||| || | || | | ||| || | || |||| Sbjct 2237 CACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCAT 2178 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 63347 |||| ||||||||||| || | || ||| ||| |||||||||| || | Sbjct 2177 TGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCA 2118 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 | || || || || ||||| || ||||| | ||||| || | || |||||||| | Sbjct 2117 GGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATAC 2058 Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467 |||| || ||| ||| |||||| | || || ||| || | ||| | | Sbjct 2057 CCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGG 1998 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 | || || || || | || ||||| ||||| || || | || || | | |||| Sbjct 1997 TACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGT 1938 Query 63528 ACGTCTCAAT----AGCTGA--GTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63581 | || || || ||| | ||| | |||| |||| || || |||||||||| Sbjct 1937 AGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGACACGCA 1884 Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641 | | |||||| || || || ||| |||||||| || | || | | ||| ||| | | Sbjct 1883 TGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCT 1824 Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 |||| ||||| || || || || | ||| ||||| || ||||| | ||| | |||| Sbjct 1823 CCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGT 1764 Query 63702 TGAGTTTATCCTT 63714 ||| | ||||| Sbjct 1763 CGAGCTCTTCCTT 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633550934706000