Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2519 161 1e-34
>seq2519
Length=5298
Score = 161 bits (178), Expect = 1e-34
Identities = 626/973 (64%), Gaps = 22/973 (2%)
Strand=Plus/Minus
Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62811
|| ||||| || || || || ||||| | || | | ||| || | || |||||||||||
Sbjct 2712 GAGGCCAGGTTGCAGACAGCGACCTCGTCAGGAGC-GCAGTACTCAATGATCTCAGTGCA 2654
Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871
|| ||| | ||||| || | || | || || ||||| ||| |||||
Sbjct 2653 CAGGTTAGAGCTGCGAATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATC 2594
Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931
||| || || ||||| || | ||||| || |||| | || | || || | |||||
Sbjct 2593 CTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGGGCCTCAAGGATAGCATACCAGA- 2535
Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC--TCT-TTCGTATAGTGTATACA 62987
| || ||||||| || | ||| || ||| | ||| |||||| |||||
Sbjct 2534 GCTTCTGAGCCTTCATGGTC---TTGCGTCCCTTGCCCATCTGTTCGTACTTCTCATACA 2478
Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047
| || ||||| || || | | | ||| || || || |||| || ||||| |
Sbjct 2477 AGGCCTCAAACTCCTCGCCGTAGCAGTCGGCCAAGCCCGGGCACTCATTGGGGCACATAA 2418
Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107
| ||| ||||||| | || |||| ||||| |||||||| |||||||| || || |
Sbjct 2417 GAGTCCAGTCTCCGTTCTTCTCGACTCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAA 2358
Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167
||| || || | | | ||||| ||||| |||||| ||||| | |||
Sbjct 2357 GAAAGAGGTCACGAGCGCGGACCTCCTCCTTTCCGTGATTCTTGCGCAGATCCAAGAAGT 2298
Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227
| | | || | ||||| || || | ||| ||||| | | || || || ||||| |
Sbjct 2297 CGAAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGACGCTTGTTAC 2238
Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287
| ||||| || | ||| | ||| ||||| || | || | | ||| || | || ||||
Sbjct 2237 CACCCTGGTCAACGTAGCGAGCCGTGTTGTTGAAGACACGAAGCATAGGGACAACGCCAT 2178
Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 63347
|||| ||||||||||| || | || ||| ||| |||||||||| || |
Sbjct 2177 TGGAGGTACCATTGGTGCCGGCAATGTAGGAGCCAGTGGCACGAATGCGGTGAACATTCA 2118
Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407
| || || || || ||||| || ||||| | ||||| || | || |||||||| |
Sbjct 2117 GGCCGATACCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCATAGATAC 2058
Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467
|||| || ||| ||| |||||| | || || ||| || | ||| | |
Sbjct 2057 CCTCGATGGAATCTTCCTTCATGTCGACGAGGAAGCAGGAGGATAGCTGGGCCTGTGGGG 1998
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527
| || || || || | || ||||| ||||| || || | || || | | ||||
Sbjct 1997 TACCAGCGTTGAAGAGTGTGGGAGAGGCGTGCGTGAAGAACTTGCTGGACATCAAGTTGT 1938
Query 63528 ACGTCTCAAT----AGCTGA--GTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63581
| || || || ||| | ||| | |||| |||| || || ||||||||||
Sbjct 1937 AGGTTTCGATGACGCGCTCAACGTCGTCACCCCA--GATG----CCAACGGCGACACGCA 1884
Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641
| | |||||| || || || ||| |||||||| || | || | | ||| ||| | |
Sbjct 1883 TGATCATGTGTTGCGGCCTCTCAGCGATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCT 1824
Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
|||| ||||| || || || || | ||| ||||| || ||||| | ||| | ||||
Sbjct 1823 CCAAGGTTTTGAAGCCGAAGTACTGGTAGTTGAAGTCGCGGTCGTATACAATGGCAGAGT 1764
Query 63702 TGAGTTTATCCTT 63714
||| | |||||
Sbjct 1763 CGAGCTCTTCCTT 1751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633550934706000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |