Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq7566 129 5e-25
seq1773 98.7 8e-16
>seq7566
Length=2327
Score = 129 bits (142), Expect = 5e-25
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || ||||| || |||| ||||| ||||| | ||
Sbjct 1237 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCYTCC 1296
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || |||||||||||||| || ||||| ||
Sbjct 1297 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCYCCCGACCAG 1356
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || || ||||| ||| | ||||| ||||||| ||||||| ||||||
Sbjct 1357 CAGCGYTTGATCTTCGCYGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 1416
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || |||||| | || | || |||| |||| || |||
Sbjct 1417 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 1464
>seq1773
Length=6176
Score = 98.7 bits (108), Expect = 8e-16
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || ||||| || | || ||||| || || || | || || |
Sbjct 5160 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACSAT 5219
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || |||||||||||||| || ||||| || || || |
Sbjct 5220 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCTT 5279
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | ||||| ||||||| | ||||| ||||||||||| ||
Sbjct 5280 GATCTTYGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATTCAGAA 5339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419675643522775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |