Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3410 120 6e-22 seq4766 109 1e-18 seq1472 104 5e-17 seq7738 87.8 4e-12 seq1394 87.8 4e-12 >seq3410 Length=4507 Score = 120 bits (132), Expect = 6e-22 Identities = 273/406 (67%), Gaps = 10/406 (2%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582 ||||| ||||| || | | || || |||| ||||| || ||||| || | |||||| Sbjct 1703 TTCATGACACC-GGCCTTCTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 1761 Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 |||| ||||| ||||||||||||||||||||| | | ||||| |||| | Sbjct 1762 GCCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTT 1821 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702 |||||| || || | | |||||| || || ||||| | ||||| ||||| | || Sbjct 1822 GCCAAGAGCAACCAGAAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGA 1881 Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 ||||||||||| || |||||| | || ||| | ||| |||| ||| | || Sbjct 1882 GTTCATGCCAAGCAGGGCACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGAC 1941 Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818 || || | | || ||| | ||||| | | | | | ||||| || | | Sbjct 1942 CGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGATGGG 1997 Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878 ||||||| || | | || | ||| || ||||| || ||| ||||| |||||||| Sbjct 1998 AGTACAGCAGGCAGGCGAAGTCGGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGG 2057 Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924 | | |||||| ||||| | ||||| ||| ||||||||||||| Sbjct 2058 AGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 2103 >seq4766 Length=3560 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||| ||||| ||| Sbjct 876 GGTGAGGACCTCTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 935 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| ||||||||||| | || || ||||| ||| ||||| || | Sbjct 936 CAGACCCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGCCCCAACGGTTCC 995 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | || || || || || ||| Sbjct 996 GGCAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 1054 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| ||||||| Sbjct 1055 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTCGACTC 1096 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || ||||| || || ||||| ||||| Sbjct 1691 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCCGGCAAGTCGACGCTCATCAACGTCCT 1750 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 || || ||| | |||| |||| | | |||| ||||| || || || Sbjct 1751 CACCGGTGAGCTCATCCCCACGCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 1810 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||| ||| ||||||||| ||||||||||||| ||| || | | Sbjct 1811 CTACATCAAGCAGCACGCCTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCCGA 1870 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| || |||| || Sbjct 1871 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 1921 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || |||||| ||||| | ||| ||| || || Sbjct 2280 CACTCGCGCATGCGCGGTCTGTCCGGTGGCCAGCGTGTCAAGGTCGTCCTCGCCGCCTGC 2339 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | || ||| ||||||| ||||||||||| |||||||| || ||||| || Sbjct 2340 TCT-TGGCAGCGTCCCCACTTGATCGTCCTCGACGAGCCCACCAACTACCTCGACCGTGA 2398 >seq1472 Length=6678 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| |||||||||||| |||| | |||| ||||| || | Sbjct 3048 GTCGGCTCTCTGTCCGGTGGATGGAAGATGAAGTTGGCGTTGGCTCGTGCCATGCTCAAG 2989 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| ||||| ||||| || || || ||||||||| ||||| ||||| | ||| Sbjct 2988 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGACGTTGCCAACATTGCC 2929 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | ||||||| Sbjct 2928 TGGCTCGAGACCTACCT 2912 >seq7738 Length=2267 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 1147 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 1206 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 1207 CCCACGTCGGGCTCAATTC-CCGTC 1230 >seq1394 Length=6803 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 3708 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 3649 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 3648 CCCACGTCGGGCTCAATTC-CCGTC 3625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027702013657635