Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012-
03-15] 10,235 sequences; 49,084,868 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3410 120 6e-22
seq4766 109 1e-18
seq1472 104 5e-17
seq7738 87.8 4e-12
seq1394 87.8 4e-12
>seq3410
Length=4507
Score = 120 bits (132), Expect = 6e-22
Identities = 273/406 (67%), Gaps = 10/406 (2%)
Strand=Plus/Plus
Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582
||||| ||||| || | | || || |||| ||||| || ||||| || | ||||||
Sbjct 1703 TTCATGACACC-GGCCTTCTGGTAGTCAGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 1761
Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642
|||| ||||| ||||||||||||||||||||| | | ||||| |||| |
Sbjct 1762 GCCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTT 1821
Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702
|||||| || || | | |||||| || || ||||| | ||||| ||||| | ||
Sbjct 1822 GCCAAGAGCAACCAGAAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAAGTTGGA 1881
Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762
||||||||||| || |||||| | || ||| | ||| |||| ||| | ||
Sbjct 1882 GTTCATGCCAAGCAGGGCACAAGGCAAGGCTTCAGTCAGGAACTCCTGCTCGATCTTGAC 1941
Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818
|| || | | || ||| | ||||| | | | | | ||||| || | |
Sbjct 1942 CGCATCGACGATGATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGATGGG 1997
Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878
||||||| || | | || | ||| || ||||| || ||| ||||| ||||||||
Sbjct 1998 AGTACAGCAGGCAGGCGAAGTCGGTGTGGAGTCCCTCATCACGAGAGATGAGCTCGTTGG 2057
Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924
| | |||||| ||||| | ||||| ||| |||||||||||||
Sbjct 2058 AGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 2103
>seq4766
Length=3560
Score = 109 bits (120), Expect = 1e-18
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| ||||| || |||| ||||| ||||| |||
Sbjct 876 GGTGAGGACCTCTGCAACTGCACCTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 935
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| |||| ||||||||||| | || || ||||| ||| ||||| || |
Sbjct 936 CAGACCCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGCCCCAACGGTTCC 995
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||||||||| |||| ||| | || || || || || |||
Sbjct 996 GGCAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 1054
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| |||||||
Sbjct 1055 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTCGACTC 1096
Score = 105 bits (116), Expect = 1e-17
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || |||| |||||||| ||||| ||||| || ||||| || || ||||| |||||
Sbjct 1691 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCCGGCAAGTCGACGCTCATCAACGTCCT 1750
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
|| || ||| | |||| |||| | | |||| ||||| || || ||
Sbjct 1751 CACCGGTGAGCTCATCCCCACGCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 1810
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||| ||| ||||||||| ||||||||||||| ||| || | |
Sbjct 1811 CTACATCAAGCAGCACGCCTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCCGA 1870
Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||||| |||||||| | | || | ||| |||||| ||| || |||| ||
Sbjct 1871 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 1921
Score = 87.8 bits (96), Expect = 4e-12
Identities = 93/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| ||||| |||||||| || || |||||| ||||| | ||| ||| || ||
Sbjct 2280 CACTCGCGCATGCGCGGTCTGTCCGGTGGCCAGCGTGTCAAGGTCGTCCTCGCCGCCTGC 2339
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||| ||||| | || ||| ||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 2340 TCT-TGGCAGCGTCCCCACTTGATCGTCCTCGACGAGCCCACCAACTACCTCGACCGTGA 2398
>seq1472
Length=6678
Score = 104 bits (114), Expect = 5e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || |||||||| ||||| |||||||||||| |||| | |||| ||||| || |
Sbjct 3048 GTCGGCTCTCTGTCCGGTGGATGGAAGATGAAGTTGGCGTTGGCTCGTGCCATGCTCAAG 2989
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| ||||| ||||| || || || ||||||||| ||||| ||||| | |||
Sbjct 2988 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGACGTTGCCAACATTGCC 2929
Query 279816 TGGCTAGTGTCCTACCT 279832
||||| | | |||||||
Sbjct 2928 TGGCTCGAGACCTACCT 2912
>seq7738
Length=2267
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 1147 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 1206
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 1207 CCCACGTCGGGCTCAATTC-CCGTC 1230
>seq1394
Length=6803
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 3708 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 3649
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 3648 CCCACGTCGGGCTCAATTC-CCGTC 3625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027702013657635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |